miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 239856 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 239834 0.68 0.889278
Target:  5'- uGGCCAUG-CCgUGCUCguugUCGGUggcgcggaaGCCCa -3'
miRNA:   3'- uCUGGUGCuGG-ACGAGa---AGUCG---------CGGG- -5'
14096 5' -56.9 NC_003521.1 + 239035 0.68 0.854008
Target:  5'- cGGACCcccgGACCUGgUCg-CGGCGCCg -3'
miRNA:   3'- -UCUGGug--CUGGACgAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 238894 0.7 0.779323
Target:  5'- --uCCGCGuCCUGCggUCUggcUCGGCGCCa -3'
miRNA:   3'- ucuGGUGCuGGACG--AGA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 231944 0.68 0.875773
Target:  5'- cAGACCAUGACUUuCUCUcgUCGGaGCUCu -3'
miRNA:   3'- -UCUGGUGCUGGAcGAGA--AGUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 226081 0.72 0.655532
Target:  5'- cGGCCGCGGCCgGCcCgUCA-CGCCCa -3'
miRNA:   3'- uCUGGUGCUGGaCGaGaAGUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 223612 0.67 0.895716
Target:  5'- gAGACCuCGGCCUcCgUCUgguaGGCGUCCa -3'
miRNA:   3'- -UCUGGuGCUGGAcG-AGAag--UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 223360 0.67 0.919299
Target:  5'- cGGCgGCGGCCUuggucagcaGCgacaucgCGGCGCCCc -3'
miRNA:   3'- uCUGgUGCUGGA---------CGagaa---GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 222756 0.67 0.907946
Target:  5'- uGGGCUACGGCCacgGCgUCgguggggUCGGCGCa- -3'
miRNA:   3'- -UCUGGUGCUGGa--CG-AGa------AGUCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 218643 0.69 0.846371
Target:  5'- cGGCCACGGCCgg-----CGGCGCCUc -3'
miRNA:   3'- uCUGGUGCUGGacgagaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 215168 0.66 0.934662
Target:  5'- uGGACCagcACGAUCUGCcgccugaugUCguggUCAcGCGCCa -3'
miRNA:   3'- -UCUGG---UGCUGGACG---------AGa---AGU-CGCGGg -5'
14096 5' -56.9 NC_003521.1 + 214826 0.69 0.846371
Target:  5'- gGGuCUGCGGCgCUGCggCUUCAucaccGUGCCCg -3'
miRNA:   3'- -UCuGGUGCUG-GACGa-GAAGU-----CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 214720 0.7 0.770308
Target:  5'- aAGACCGCGucguCUgucuggGCUUcggUCAGCGCCg -3'
miRNA:   3'- -UCUGGUGCu---GGa-----CGAGa--AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 214499 0.71 0.742606
Target:  5'- aAGACCAgGGCguugcugggaUGCUUguagUCGGUGCCCu -3'
miRNA:   3'- -UCUGGUgCUGg---------ACGAGa---AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 214373 0.69 0.838553
Target:  5'- cAGGCCACG-CCguugcagGCcacgaaCAGCGCCCa -3'
miRNA:   3'- -UCUGGUGCuGGa------CGagaa--GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 213936 0.68 0.889278
Target:  5'- uGGACgGCGgucACCUGCUCc---GCGCCa -3'
miRNA:   3'- -UCUGgUGC---UGGACGAGaaguCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 212509 0.67 0.907946
Target:  5'- gAGACCACGuagGCCUggaugaugagGCUCUUgucgaaacaCAG-GCCCa -3'
miRNA:   3'- -UCUGGUGC---UGGA----------CGAGAA---------GUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 210517 0.66 0.939338
Target:  5'- uGGAgCGCGGUCUGCUgaagagcuaCUUCGacgacguggagcGCGCCCg -3'
miRNA:   3'- -UCUgGUGCUGGACGA---------GAAGU------------CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 209916 0.69 0.814076
Target:  5'- aGGACCGCucucGCCUGCcgCagUUCAGCucgGCCCu -3'
miRNA:   3'- -UCUGGUGc---UGGACGa-G--AAGUCG---CGGG- -5'
14096 5' -56.9 NC_003521.1 + 208971 0.66 0.928757
Target:  5'- -cACCGCGccGCCgucuucuucaacGCcacCUUCGGCGCCCg -3'
miRNA:   3'- ucUGGUGC--UGGa-----------CGa--GAAGUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.