miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 154024 0.72 0.694748
Target:  5'- cAGcACCugGugCaUGCUCUUgccgcggcaGGCGCCCa -3'
miRNA:   3'- -UC-UGGugCugG-ACGAGAAg--------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 145762 0.73 0.62591
Target:  5'- cGACUaccugaGCGACCUGCUCUaccUCaacaagacggAGCGCUCg -3'
miRNA:   3'- uCUGG------UGCUGGACGAGA---AG----------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 52347 0.73 0.633813
Target:  5'- cAGGcCCACGGCCUGCUCguagcucggaGGCGCg- -3'
miRNA:   3'- -UCU-GGUGCUGGACGAGaag-------UCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 202372 0.73 0.635789
Target:  5'- cGGCCGcCGACCUGCUCcagCAGCaGCa- -3'
miRNA:   3'- uCUGGU-GCUGGACGAGaa-GUCG-CGgg -5'
14096 5' -56.9 NC_003521.1 + 117235 0.73 0.635789
Target:  5'- cGGCCGCGGCg-GCUCc-CGGCGCCg -3'
miRNA:   3'- uCUGGUGCUGgaCGAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 226081 0.72 0.655532
Target:  5'- cGGCCGCGGCCgGCcCgUCA-CGCCCa -3'
miRNA:   3'- uCUGGUGCUGGaCGaGaAGUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 145712 0.72 0.662429
Target:  5'- aAGGCCACGcucaagcgcgcgcgGCC-GCUCaa-GGCGCCCg -3'
miRNA:   3'- -UCUGGUGC--------------UGGaCGAGaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 54515 0.72 0.675206
Target:  5'- uGGACCAgGAUCUGCa---CGGCGCCg -3'
miRNA:   3'- -UCUGGUgCUGGACGagaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 37175 0.72 0.694748
Target:  5'- cGACCacaagucucGCGACCUGCagUUCAGCcguaaCCCg -3'
miRNA:   3'- uCUGG---------UGCUGGACGagAAGUCGc----GGG- -5'
14096 5' -56.9 NC_003521.1 + 77429 0.73 0.624922
Target:  5'- gGGGCCACGGCCgagaggaUGC-CgccgUUGGUGCCCg -3'
miRNA:   3'- -UCUGGUGCUGG-------ACGaGa---AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 141524 0.73 0.616035
Target:  5'- cGGACCu--GCCUGCUCU---GCGCCCu -3'
miRNA:   3'- -UCUGGugcUGGACGAGAaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 118113 0.73 0.606171
Target:  5'- cGACCACGACC-GC-CUcCAGC-CCCg -3'
miRNA:   3'- uCUGGUGCUGGaCGaGAaGUCGcGGG- -5'
14096 5' -56.9 NC_003521.1 + 187444 0.76 0.47261
Target:  5'- -cGCCGCGGCCUGCUCcugcUCGGUcugucgGCCCc -3'
miRNA:   3'- ucUGGUGCUGGACGAGa---AGUCG------CGGG- -5'
14096 5' -56.9 NC_003521.1 + 62079 0.75 0.501106
Target:  5'- cAGGCCACGugCgaccaguccaaccggGaacgCUUCGGCGCCCg -3'
miRNA:   3'- -UCUGGUGCugGa--------------Cga--GAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 30644 0.75 0.509521
Target:  5'- cGGCgGCGcGCCUGCUCgUCauGGCGCCUa -3'
miRNA:   3'- uCUGgUGC-UGGACGAGaAG--UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 74305 0.75 0.51894
Target:  5'- -cACCAacgaGGCCgUGCUCUUCGGuCGCCUg -3'
miRNA:   3'- ucUGGUg---CUGG-ACGAGAAGUC-GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 141110 0.74 0.566961
Target:  5'- -uACUGCGGCCcGCgcagCUUCuGCGCCCg -3'
miRNA:   3'- ucUGGUGCUGGaCGa---GAAGuCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 239856 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 145397 0.73 0.596326
Target:  5'- cGGCCugGGCCUGCUCaUCGaC-CCCa -3'
miRNA:   3'- uCUGGugCUGGACGAGaAGUcGcGGG- -5'
14096 5' -56.9 NC_003521.1 + 73726 0.73 0.596326
Target:  5'- cGGGCCGCGACCgcuucgugcagcUGCUCUUCuacauguGgGCCg -3'
miRNA:   3'- -UCUGGUGCUGG------------ACGAGAAGu------CgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.