miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 130329 1.11 0.00274
Target:  5'- aAGACCACGACCUGCUCUUCAGCGCCCu -3'
miRNA:   3'- -UCUGGUGCUGGACGAGAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 27797 0.72 0.675206
Target:  5'- cGGCCcgcuCGGCCgGCUCgccCGGCGCCa -3'
miRNA:   3'- uCUGGu---GCUGGaCGAGaa-GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 138908 0.72 0.694748
Target:  5'- -cACCACGGCC-GCUCggu-GCGCCUg -3'
miRNA:   3'- ucUGGUGCUGGaCGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 129118 0.66 0.94803
Target:  5'- cGGCgCACGGaCUGgaCgUCGGCGUCCg -3'
miRNA:   3'- uCUG-GUGCUgGACgaGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 191255 0.77 0.408983
Target:  5'- -cGCCGCGGCCcacgcggcagguggUGCUCUUCAuGaCGCCCa -3'
miRNA:   3'- ucUGGUGCUGG--------------ACGAGAAGU-C-GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 153994 0.76 0.463592
Target:  5'- cGGACCACGaccGCCUGCUggaCUUCAG-GCUCu -3'
miRNA:   3'- -UCUGGUGC---UGGACGA---GAAGUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 130470 0.75 0.481715
Target:  5'- -cGCCAgCGcuCCUGCUCUUCGGCGaCCUg -3'
miRNA:   3'- ucUGGU-GCu-GGACGAGAAGUCGC-GGG- -5'
14096 5' -56.9 NC_003521.1 + 135209 0.74 0.576714
Target:  5'- cGAgCACGcCCUGCUg--CAGCGCCUg -3'
miRNA:   3'- uCUgGUGCuGGACGAgaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 84903 0.73 0.610115
Target:  5'- gAGACCAgcgaguaggcguagcCGGCCUGCUCgcagggCGuGCGCUCg -3'
miRNA:   3'- -UCUGGU---------------GCUGGACGAGaa----GU-CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 16389 0.72 0.665381
Target:  5'- -cACCugGACC-GCUCgcccaccacgCAGCGCCUg -3'
miRNA:   3'- ucUGGugCUGGaCGAGaa--------GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 2144 0.73 0.635789
Target:  5'- cGGCCGcCGACCUGCUCcagCAGCaGCa- -3'
miRNA:   3'- uCUGGU-GCUGGACGAGaa-GUCG-CGgg -5'
14096 5' -56.9 NC_003521.1 + 39629 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 76851 0.79 0.333224
Target:  5'- aAGGCCcgGCGACC-GCcaUCUUCGGCGUCCg -3'
miRNA:   3'- -UCUGG--UGCUGGaCG--AGAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 207156 0.72 0.659475
Target:  5'- cGGGCCACGGCCggucgcuggaucccGCUCUgcuGGCcGCCCc -3'
miRNA:   3'- -UCUGGUGCUGGa-------------CGAGAag-UCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 155202 0.77 0.394948
Target:  5'- aGGugCACGACCUcucggccCUCUUC-GCGCCCu -3'
miRNA:   3'- -UCugGUGCUGGAc------GAGAAGuCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 131298 0.74 0.576714
Target:  5'- cGACCuguacACGcCCUGCUCgagCAGCGgCCg -3'
miRNA:   3'- uCUGG-----UGCuGGACGAGaa-GUCGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 139018 0.72 0.665381
Target:  5'- cGACCGCccCCUGggCUUCGugcGCGCCCa -3'
miRNA:   3'- uCUGGUGcuGGACgaGAAGU---CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 14787 0.72 0.684997
Target:  5'- aGGugCugGugCUGCUggaCUgguUCGGCGCCg -3'
miRNA:   3'- -UCugGugCugGACGA---GA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 161621 0.77 0.394948
Target:  5'- cGGGCaACGugCUGCguuUCUUCGGCGCCa -3'
miRNA:   3'- -UCUGgUGCugGACG---AGAAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 170524 0.75 0.481715
Target:  5'- -uGCUggGCGACCUGCaccgcuuucUCUUCGGCGCCg -3'
miRNA:   3'- ucUGG--UGCUGGACG---------AGAAGUCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.