Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14101 | 3' | -56.7 | NC_003521.1 | + | 120550 | 0.69 | 0.863683 |
Target: 5'- gGCCGGcGGUCCcGGGGGAgcgcccgGGGAUAa- -3' miRNA: 3'- gCGGCC-CUAGGcUCCUCU-------UCCUGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 172418 | 0.69 | 0.841859 |
Target: 5'- uCGCCgcGGGAcCCGAGGcGGAGGAgGa- -3' miRNA: 3'- -GCGG--CCCUaGGCUCCuCUUCCUgUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 71445 | 0.69 | 0.841859 |
Target: 5'- gGCgGGGAUCgCGGGG-GAA-GACAUGc -3' miRNA: 3'- gCGgCCCUAG-GCUCCuCUUcCUGUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 13894 | 0.69 | 0.833983 |
Target: 5'- uCGCCGGGGggcCCGGcgcGGAGggGGcCGc- -3' miRNA: 3'- -GCGGCCCUa--GGCU---CCUCuuCCuGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 40335 | 0.7 | 0.825939 |
Target: 5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3' miRNA: 3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 240562 | 0.7 | 0.825939 |
Target: 5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3' miRNA: 3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 13 | 0.7 | 0.825939 |
Target: 5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3' miRNA: 3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 22160 | 0.7 | 0.817732 |
Target: 5'- -aCCGGGAgaCGGuGGAGAGGGACGa- -3' miRNA: 3'- gcGGCCCUagGCU-CCUCUUCCUGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 40979 | 0.7 | 0.817732 |
Target: 5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3' miRNA: 3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 658 | 0.7 | 0.817732 |
Target: 5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3' miRNA: 3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 148378 | 0.7 | 0.80937 |
Target: 5'- aGCCgagcGGGGUgCGGGGAGGcuGGGGgGUGa -3' miRNA: 3'- gCGG----CCCUAgGCUCCUCU--UCCUgUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 156695 | 0.7 | 0.807679 |
Target: 5'- gCGCuCGGGGaaaaggugcuggCCGGGGAGGAGcGCAUGu -3' miRNA: 3'- -GCG-GCCCUa-----------GGCUCCUCUUCcUGUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 123265 | 0.7 | 0.800859 |
Target: 5'- aCGCCGGGAUCguAGGcuccGAAGuGACGUGc -3' miRNA: 3'- -GCGGCCCUAGgcUCCu---CUUC-CUGUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 175915 | 0.7 | 0.800859 |
Target: 5'- uGCUGGGGaccuggcCCGAGGAGccggagGAGGACAg- -3' miRNA: 3'- gCGGCCCUa------GGCUCCUC------UUCCUGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 155182 | 0.7 | 0.792208 |
Target: 5'- gGCCGcGGcugCCGGGGGGGAGGuGCAc- -3' miRNA: 3'- gCGGC-CCua-GGCUCCUCUUCC-UGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 3404 | 0.7 | 0.792208 |
Target: 5'- aCGCCGGcAUCCGGGGAu-GGGGCc-- -3' miRNA: 3'- -GCGGCCcUAGGCUCCUcuUCCUGuac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 4232 | 0.7 | 0.78871 |
Target: 5'- -cCCGGGAggaggaccgagaCGGGGAGGAGGACGa- -3' miRNA: 3'- gcGGCCCUag----------GCUCCUCUUCCUGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 7975 | 0.71 | 0.774515 |
Target: 5'- gGCCGGGAgggUCCGcggcggcggGGGAGGuaccGGGGCAg- -3' miRNA: 3'- gCGGCCCU---AGGC---------UCCUCU----UCCUGUac -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 164450 | 0.71 | 0.765488 |
Target: 5'- gCGCCGcGGGcCUGAGcauGAAGGGCGUGg -3' miRNA: 3'- -GCGGC-CCUaGGCUCcu-CUUCCUGUAC- -5' |
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14101 | 3' | -56.7 | NC_003521.1 | + | 48923 | 0.72 | 0.718881 |
Target: 5'- aGCCGGuGUCCGu---GAAGGACGUGg -3' miRNA: 3'- gCGGCCcUAGGCuccuCUUCCUGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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