miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 147152 0.67 0.931462
Target:  5'- cCGaCCGGGGUCCGggacAGGGGAAuuuuGGCAa- -3'
miRNA:   3'- -GC-GGCCCUAGGC----UCCUCUUc---CUGUac -5'
14101 3' -56.7 NC_003521.1 + 6821 0.67 0.92998
Target:  5'- aGCCgauccagaccaggaGGGcgCCGAGGAGGuuguagugGGaGGCGUGg -3'
miRNA:   3'- gCGG--------------CCCuaGGCUCCUCU--------UC-CUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 109786 0.67 0.926446
Target:  5'- cCGCCGccg-CCGcccAGGAGAcGGGACGUGg -3'
miRNA:   3'- -GCGGCccuaGGC---UCCUCU-UCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 123356 0.67 0.926446
Target:  5'- uCGCCGGGugUgGAGGAGGcggcgGGGGCugGUGa -3'
miRNA:   3'- -GCGGCCCuaGgCUCCUCU-----UCCUG--UAC- -5'
14101 3' -56.7 NC_003521.1 + 99032 0.67 0.92121
Target:  5'- gCGCCGGcuccgggccGGUCCGAGGu-AGGGACuuUGa -3'
miRNA:   3'- -GCGGCC---------CUAGGCUCCucUUCCUGu-AC- -5'
14101 3' -56.7 NC_003521.1 + 236330 0.67 0.92121
Target:  5'- -aUCGGGGcCCGGacGGGGGAGGACGa- -3'
miRNA:   3'- gcGGCCCUaGGCU--CCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 138585 0.67 0.92121
Target:  5'- gGgCGGGAcgCgacaGAGGAGggGGAgAUGc -3'
miRNA:   3'- gCgGCCCUa-Gg---CUCCUCuuCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 126711 0.67 0.915196
Target:  5'- uGCCGGugagcaGAUCCGAGGcGGcgcggucGGcGACAUGg -3'
miRNA:   3'- gCGGCC------CUAGGCUCCuCU-------UC-CUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 172252 0.67 0.910078
Target:  5'- uGCgGuaGUCCGAGGAGcGGGGGCAc- -3'
miRNA:   3'- gCGgCccUAGGCUCCUC-UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 89639 0.67 0.910078
Target:  5'- cCGUCGcGG--CCGAGGAGcAGGACGg- -3'
miRNA:   3'- -GCGGC-CCuaGGCUCCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 125712 0.68 0.904185
Target:  5'- aCGCCGGcGGUCaCGAcGGGGGcggcgacggcgcAGGGCAg- -3'
miRNA:   3'- -GCGGCC-CUAG-GCU-CCUCU------------UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 206150 0.68 0.897454
Target:  5'- gGCCGGGGaaaggccUCCGAgaagcccaGGAGcAGGGCGg- -3'
miRNA:   3'- gCGGCCCU-------AGGCU--------CCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 33604 0.68 0.891755
Target:  5'- cCGCaCGGGAggaGAGGAaccGGAGGACGa- -3'
miRNA:   3'- -GCG-GCCCUaggCUCCU---CUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 27686 0.68 0.891755
Target:  5'- gCGCgCGGaGAUCaCGAGGAGAgaaaccacAGGAgaGUGg -3'
miRNA:   3'- -GCG-GCC-CUAG-GCUCCUCU--------UCCUg-UAC- -5'
14101 3' -56.7 NC_003521.1 + 64409 0.68 0.889817
Target:  5'- aGCgCGGGcugaacaaacuauaCGAGGAGGAGGACGa- -3'
miRNA:   3'- gCG-GCCCuag-----------GCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 190689 0.68 0.878485
Target:  5'- aCGCCGGGGa--GAGGAGAcGGGAgGa- -3'
miRNA:   3'- -GCGGCCCUaggCUCCUCU-UCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 19080 0.68 0.871545
Target:  5'- aGCUGGGccgugagGAGGAGggGGACGg- -3'
miRNA:   3'- gCGGCCCuagg---CUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 149430 0.68 0.871545
Target:  5'- gGCCGGGAUuuGGGucGggGGuCcgGg -3'
miRNA:   3'- gCGGCCCUAggCUCcuCuuCCuGuaC- -5'
14101 3' -56.7 NC_003521.1 + 186535 0.68 0.871545
Target:  5'- aGCgGGGGcUCCGuGGGAGGcAGGGCcgGc -3'
miRNA:   3'- gCGgCCCU-AGGC-UCCUCU-UCCUGuaC- -5'
14101 3' -56.7 NC_003521.1 + 36145 0.68 0.871545
Target:  5'- uCGUCGacccugcCCGAGGAGGAGGACAc- -3'
miRNA:   3'- -GCGGCccua---GGCUCCUCUUCCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.