miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 3' -56 NC_003521.1 + 64362 0.7 0.793876
Target:  5'- gGGCGCCCUggacAUGCccgaggUGCGGGCG-CGu -3'
miRNA:   3'- -UUGCGGGAaa--UACG------ACGCCCGCuGUg -5'
14105 3' -56 NC_003521.1 + 76370 0.68 0.867797
Target:  5'- cACGCCCUUcAUGCUcagGCccGCGGCGCc -3'
miRNA:   3'- uUGCGGGAAaUACGA---CGccCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 79236 0.71 0.718336
Target:  5'- aGAUGCCCgcg--GUaGCGcGGCGACACg -3'
miRNA:   3'- -UUGCGGGaaauaCGaCGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 80045 0.75 0.508681
Target:  5'- cGCGCCCgc-GUGCcGCcGGCGGCACg -3'
miRNA:   3'- uUGCGGGaaaUACGaCGcCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 83870 0.67 0.893587
Target:  5'- -cCGUCCUcgacccagucuucggGUGCaucUGCGGGUGGCGCg -3'
miRNA:   3'- uuGCGGGAaa-------------UACG---ACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 95874 0.68 0.875058
Target:  5'- --aGCCCUUcGUcGCgagccaGCGcGGCGACGCg -3'
miRNA:   3'- uugCGGGAAaUA-CGa-----CGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 104146 0.73 0.628025
Target:  5'- -cCGCCCUgcucgGUGCucUGCGGcgGCGGCGCg -3'
miRNA:   3'- uuGCGGGAaa---UACG--ACGCC--CGCUGUG- -5'
14105 3' -56 NC_003521.1 + 105211 0.66 0.944663
Target:  5'- -cCGCCCgcga-GCUGCGcGGCGuCAa -3'
miRNA:   3'- uuGCGGGaaauaCGACGC-CCGCuGUg -5'
14105 3' -56 NC_003521.1 + 105653 0.67 0.908087
Target:  5'- --aGCCCagcUcgGggGUGGGCGGCACg -3'
miRNA:   3'- uugCGGGaa-AuaCgaCGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 115839 0.67 0.895547
Target:  5'- aGGCGCUg-----GCUcagGCGGGCGGCGCa -3'
miRNA:   3'- -UUGCGGgaaauaCGA---CGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 115924 0.71 0.697555
Target:  5'- --gGCCCc--GUGCUGUgggagaaGGGCGACGCg -3'
miRNA:   3'- uugCGGGaaaUACGACG-------CCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 116744 0.68 0.881411
Target:  5'- cGGCGCCCUucaaacacguggcUUGUGCagcGUGGGCcgccgccgcGGCACg -3'
miRNA:   3'- -UUGCGGGA-------------AAUACGa--CGCCCG---------CUGUG- -5'
14105 3' -56 NC_003521.1 + 118911 0.66 0.93538
Target:  5'- -uCGCCCUcgUcgGCgccgcggcGUGGGCGGCGg -3'
miRNA:   3'- uuGCGGGAa-AuaCGa-------CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 122199 0.66 0.940138
Target:  5'- cGACGCCCUcgcgacuccAUGCUGCcuGCGAgCGCg -3'
miRNA:   3'- -UUGCGGGAaa-------UACGACGccCGCU-GUG- -5'
14105 3' -56 NC_003521.1 + 126930 1.08 0.004349
Target:  5'- gAACGCCCUUUAUGCUGCGGGCGACACg -3'
miRNA:   3'- -UUGCGGGAAAUACGACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 127359 0.66 0.938735
Target:  5'- cACGCCCUccgugGUGCgcgGCaggugcgugaugaaGGGCGGcCACa -3'
miRNA:   3'- uUGCGGGAaa---UACGa--CG--------------CCCGCU-GUG- -5'
14105 3' -56 NC_003521.1 + 130277 0.66 0.93538
Target:  5'- gGGCGCCCUcuccgGCUaccUGGGCGAgGCc -3'
miRNA:   3'- -UUGCGGGAaaua-CGAc--GCCCGCUgUG- -5'
14105 3' -56 NC_003521.1 + 131307 0.67 0.895547
Target:  5'- cACGCCCUgcucgaGCaGCGGcCGGCGCg -3'
miRNA:   3'- uUGCGGGAaaua--CGaCGCCcGCUGUG- -5'
14105 3' -56 NC_003521.1 + 132410 0.66 0.940138
Target:  5'- aGACGCUgUUUcgcCUGUGcGGCGACGCc -3'
miRNA:   3'- -UUGCGGgAAAuacGACGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 132695 0.7 0.793876
Target:  5'- cGCGCCCg----GCUgGCGGgacGCGGCACu -3'
miRNA:   3'- uUGCGGGaaauaCGA-CGCC---CGCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.