miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 3' -56 NC_003521.1 + 1616 0.78 0.351389
Target:  5'- cAGCGCCU---GUGCUGCGGGUGGCu- -3'
miRNA:   3'- -UUGCGGGaaaUACGACGCCCGCUGug -5'
14105 3' -56 NC_003521.1 + 5846 0.68 0.867797
Target:  5'- cGGgGCCCuUUUAUGCgaucCGGGCGcggGCACa -3'
miRNA:   3'- -UUgCGGG-AAAUACGac--GCCCGC---UGUG- -5'
14105 3' -56 NC_003521.1 + 13856 0.66 0.940601
Target:  5'- cGGCGCgggggucuCUGCGGGCGGCGCc -3'
miRNA:   3'- -UUGCGggaaauacGACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 16035 0.66 0.925164
Target:  5'- cGCGuCCCgcacgacGUGgUGCGGGCGcugcuGCACa -3'
miRNA:   3'- uUGC-GGGaaa----UACgACGCCCGC-----UGUG- -5'
14105 3' -56 NC_003521.1 + 17004 0.66 0.944663
Target:  5'- aGGCGCCCgcg--GUgGCGG-CGGCGCa -3'
miRNA:   3'- -UUGCGGGaaauaCGaCGCCcGCUGUG- -5'
14105 3' -56 NC_003521.1 + 22402 0.68 0.882106
Target:  5'- -cCGCCgCUgucgcuggccAUGCUGCGcGGCGugGCc -3'
miRNA:   3'- uuGCGG-GAaa--------UACGACGC-CCGCugUG- -5'
14105 3' -56 NC_003521.1 + 22461 0.68 0.852658
Target:  5'- uGCGUCgCUUg--GCgaGCGGGUGGCGCu -3'
miRNA:   3'- uUGCGG-GAAauaCGa-CGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 28839 0.7 0.753175
Target:  5'- cGGCGCCUggacgacgaGCUGCGGcggcGCGGCACg -3'
miRNA:   3'- -UUGCGGGaaaua----CGACGCC----CGCUGUG- -5'
14105 3' -56 NC_003521.1 + 32164 0.75 0.518333
Target:  5'- aGGCGCCCgcgUUguuccaucgaaaGUGCUGCGGGUcgGGCAUg -3'
miRNA:   3'- -UUGCGGGa--AA------------UACGACGCCCG--CUGUG- -5'
14105 3' -56 NC_003521.1 + 36381 0.66 0.930389
Target:  5'- cGCGUgCUgcuuuccGUGCUGCuGGCGGCAg -3'
miRNA:   3'- uUGCGgGAaa-----UACGACGcCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 38416 0.7 0.774751
Target:  5'- uGCGCCUg----GCUuuucaccgggggcGCGGGUGACACg -3'
miRNA:   3'- uUGCGGGaaauaCGA-------------CGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 39139 0.77 0.39154
Target:  5'- gGAUGCCCg-UGUGCUGCcaccGGCGGCGCa -3'
miRNA:   3'- -UUGCGGGaaAUACGACGc---CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 39562 0.67 0.910485
Target:  5'- cGACGCCggccaucugGCUGCGcGGCGugAUg -3'
miRNA:   3'- -UUGCGGgaaaua---CGACGC-CCGCugUG- -5'
14105 3' -56 NC_003521.1 + 42557 0.66 0.948959
Target:  5'- cGACGCCCggcugGCUGUccGGCGGC-Cg -3'
miRNA:   3'- -UUGCGGGaaauaCGACGc-CCGCUGuG- -5'
14105 3' -56 NC_003521.1 + 43886 0.66 0.940138
Target:  5'- -uCGCCCacgcuaccgGUGCUGCcGGUGACGa -3'
miRNA:   3'- uuGCGGGaaa------UACGACGcCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 55735 0.68 0.875058
Target:  5'- cAGCGCCUccca-GCgcGCGGGCGGCAg -3'
miRNA:   3'- -UUGCGGGaaauaCGa-CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 59235 0.78 0.348306
Target:  5'- gGACGCCCUggAggugaacguggggcUGCUGCGGGCGuucguaaGCGCg -3'
miRNA:   3'- -UUGCGGGAaaU--------------ACGACGCCCGC-------UGUG- -5'
14105 3' -56 NC_003521.1 + 59350 0.7 0.784843
Target:  5'- cACGCCac----GCUGCaGGCGGCGCg -3'
miRNA:   3'- uUGCGGgaaauaCGACGcCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 59511 0.73 0.597685
Target:  5'- cGGCGCCCUg---GCccGCGGGCGGCc- -3'
miRNA:   3'- -UUGCGGGAaauaCGa-CGCCCGCUGug -5'
14105 3' -56 NC_003521.1 + 60673 0.71 0.728126
Target:  5'- cGAUGCUCUUcGUGCUGCGGcCG-CGCg -3'
miRNA:   3'- -UUGCGGGAAaUACGACGCCcGCuGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.