miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 3' -56 NC_003521.1 + 126930 1.08 0.004349
Target:  5'- gAACGCCCUUUAUGCUGCGGGCGACACg -3'
miRNA:   3'- -UUGCGGGAAAUACGACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 59235 0.78 0.348306
Target:  5'- gGACGCCCUggAggugaacguggggcUGCUGCGGGCGuucguaaGCGCg -3'
miRNA:   3'- -UUGCGGGAaaU--------------ACGACGCCCGC-------UGUG- -5'
14105 3' -56 NC_003521.1 + 1616 0.78 0.351389
Target:  5'- cAGCGCCU---GUGCUGCGGGUGGCu- -3'
miRNA:   3'- -UUGCGGGaaaUACGACGCCCGCUGug -5'
14105 3' -56 NC_003521.1 + 201843 0.78 0.351389
Target:  5'- cAGCGCCU---GUGCUGCGGGUGGCu- -3'
miRNA:   3'- -UUGCGGGaaaUACGACGCCCGCUGug -5'
14105 3' -56 NC_003521.1 + 239367 0.77 0.39154
Target:  5'- gGAUGCCCg-UGUGCUGCcaccGGCGGCGCa -3'
miRNA:   3'- -UUGCGGGaaAUACGACGc---CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 39139 0.77 0.39154
Target:  5'- gGAUGCCCg-UGUGCUGCcaccGGCGGCGCa -3'
miRNA:   3'- -UUGCGGGaaAUACGACGc---CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 137287 0.76 0.461655
Target:  5'- cAGCGaCCUgga-GCUGCGGGUGGCGCg -3'
miRNA:   3'- -UUGCgGGAaauaCGACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 80045 0.75 0.508681
Target:  5'- cGCGCCCgc-GUGCcGCcGGCGGCACg -3'
miRNA:   3'- uUGCGGGaaaUACGaCGcCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 32164 0.75 0.518333
Target:  5'- aGGCGCCCgcgUUguuccaucgaaaGUGCUGCGGGUcgGGCAUg -3'
miRNA:   3'- -UUGCGGGa--AA------------UACGACGCCCG--CUGUG- -5'
14105 3' -56 NC_003521.1 + 228971 0.74 0.537847
Target:  5'- -uCGUCCgaggagGUGC-GCGGGCGGCGCa -3'
miRNA:   3'- uuGCGGGaaa---UACGaCGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 59511 0.73 0.597685
Target:  5'- cGGCGCCCUg---GCccGCGGGCGGCc- -3'
miRNA:   3'- -UUGCGGGAaauaCGa-CGCCCGCUGug -5'
14105 3' -56 NC_003521.1 + 145865 0.73 0.617899
Target:  5'- --gGCCCg----GCgGCGGGCGGCGCc -3'
miRNA:   3'- uugCGGGaaauaCGaCGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 104146 0.73 0.628025
Target:  5'- -cCGCCCUgcucgGUGCucUGCGGcgGCGGCGCg -3'
miRNA:   3'- uuGCGGGAaa---UACG--ACGCC--CGCUGUG- -5'
14105 3' -56 NC_003521.1 + 162582 0.72 0.688571
Target:  5'- cAGCGCUCUgccgGCUGCGG-UGGCACu -3'
miRNA:   3'- -UUGCGGGAaauaCGACGCCcGCUGUG- -5'
14105 3' -56 NC_003521.1 + 115924 0.71 0.697555
Target:  5'- --gGCCCc--GUGCUGUgggagaaGGGCGACGCg -3'
miRNA:   3'- uugCGGGaaaUACGACG-------CCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 79236 0.71 0.718336
Target:  5'- aGAUGCCCgcg--GUaGCGcGGCGACACg -3'
miRNA:   3'- -UUGCGGGaaauaCGaCGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 60673 0.71 0.728126
Target:  5'- cGAUGCUCUUcGUGCUGCGGcCG-CGCg -3'
miRNA:   3'- -UUGCGGGAAaUACGACGCCcGCuGUG- -5'
14105 3' -56 NC_003521.1 + 141285 0.71 0.728126
Target:  5'- -cCGCCUccgcgacagGUGCaggUGCGGGCGGCGCc -3'
miRNA:   3'- uuGCGGGaaa------UACG---ACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 144889 0.71 0.728126
Target:  5'- -uCGCCaag-AUGCUGCGGGCccacGGCAUg -3'
miRNA:   3'- uuGCGGgaaaUACGACGCCCG----CUGUG- -5'
14105 3' -56 NC_003521.1 + 28839 0.7 0.753175
Target:  5'- cGGCGCCUggacgacgaGCUGCGGcggcGCGGCACg -3'
miRNA:   3'- -UUGCGGGaaaua----CGACGCC----CGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.