Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14105 | 3' | -56 | NC_003521.1 | + | 145559 | 0.68 | 0.860328 |
Target: 5'- gGAC-CCCUUcgugcagaacGUGCUGC-GGCGGCACg -3' miRNA: 3'- -UUGcGGGAAa---------UACGACGcCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 28839 | 0.7 | 0.753175 |
Target: 5'- cGGCGCCUggacgacgaGCUGCGGcggcGCGGCACg -3' miRNA: 3'- -UUGCGGGaaaua----CGACGCC----CGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 38416 | 0.7 | 0.774751 |
Target: 5'- uGCGCCUg----GCUuuucaccgggggcGCGGGUGACACg -3' miRNA: 3'- uUGCGGGaaauaCGA-------------CGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 59350 | 0.7 | 0.784843 |
Target: 5'- cACGCCac----GCUGCaGGCGGCGCg -3' miRNA: 3'- uUGCGGgaaauaCGACGcCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 156619 | 0.7 | 0.784843 |
Target: 5'- cGCGCCUg--GUGCUGC--GCGACGCc -3' miRNA: 3'- uUGCGGGaaaUACGACGccCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 64362 | 0.7 | 0.793876 |
Target: 5'- gGGCGCCCUggacAUGCccgaggUGCGGGCG-CGu -3' miRNA: 3'- -UUGCGGGAaa--UACG------ACGCCCGCuGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 132695 | 0.7 | 0.793876 |
Target: 5'- cGCGCCCg----GCUgGCGGgacGCGGCACu -3' miRNA: 3'- uUGCGGGaaauaCGA-CGCC---CGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 150917 | 0.68 | 0.852658 |
Target: 5'- cGCGCCCUUccacgGCgUGUGGGCcgaGCGCg -3' miRNA: 3'- uUGCGGGAAaua--CG-ACGCCCGc--UGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 22461 | 0.68 | 0.852658 |
Target: 5'- uGCGUCgCUUg--GCgaGCGGGUGGCGCu -3' miRNA: 3'- uUGCGG-GAAauaCGa-CGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 60673 | 0.71 | 0.728126 |
Target: 5'- cGAUGCUCUUcGUGCUGCGGcCG-CGCg -3' miRNA: 3'- -UUGCGGGAAaUACGACGCCcGCuGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 144889 | 0.71 | 0.728126 |
Target: 5'- -uCGCCaag-AUGCUGCGGGCccacGGCAUg -3' miRNA: 3'- uuGCGGgaaaUACGACGCCCG----CUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 141285 | 0.71 | 0.728126 |
Target: 5'- -cCGCCUccgcgacagGUGCaggUGCGGGCGGCGCc -3' miRNA: 3'- uuGCGGGaaa------UACG---ACGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 201843 | 0.78 | 0.351389 |
Target: 5'- cAGCGCCU---GUGCUGCGGGUGGCu- -3' miRNA: 3'- -UUGCGGGaaaUACGACGCCCGCUGug -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 239367 | 0.77 | 0.39154 |
Target: 5'- gGAUGCCCg-UGUGCUGCcaccGGCGGCGCa -3' miRNA: 3'- -UUGCGGGaaAUACGACGc---CCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 137287 | 0.76 | 0.461655 |
Target: 5'- cAGCGaCCUgga-GCUGCGGGUGGCGCg -3' miRNA: 3'- -UUGCgGGAaauaCGACGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 32164 | 0.75 | 0.518333 |
Target: 5'- aGGCGCCCgcgUUguuccaucgaaaGUGCUGCGGGUcgGGCAUg -3' miRNA: 3'- -UUGCGGGa--AA------------UACGACGCCCG--CUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 228971 | 0.74 | 0.537847 |
Target: 5'- -uCGUCCgaggagGUGC-GCGGGCGGCGCa -3' miRNA: 3'- uuGCGGGaaa---UACGaCGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 145865 | 0.73 | 0.617899 |
Target: 5'- --gGCCCg----GCgGCGGGCGGCGCc -3' miRNA: 3'- uugCGGGaaauaCGaCGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 162582 | 0.72 | 0.688571 |
Target: 5'- cAGCGCUCUgccgGCUGCGG-UGGCACu -3' miRNA: 3'- -UUGCGGGAaauaCGACGCCcGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 79236 | 0.71 | 0.718336 |
Target: 5'- aGAUGCCCgcg--GUaGCGcGGCGACACg -3' miRNA: 3'- -UUGCGGGaaauaCGaCGC-CCGCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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