Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14105 | 3' | -56 | NC_003521.1 | + | 43886 | 0.66 | 0.940138 |
Target: 5'- -uCGCCCacgcuaccgGUGCUGCcGGUGACGa -3' miRNA: 3'- uuGCGGGaaa------UACGACGcCCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 168984 | 0.66 | 0.93538 |
Target: 5'- cGACGCgCgucgGUcGCgggagGCGGGCGACGg -3' miRNA: 3'- -UUGCGgGaaa-UA-CGa----CGCCCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 226871 | 0.66 | 0.937311 |
Target: 5'- gGGCGUCCagcgagggcaGCUGCGGG-GGCACc -3' miRNA: 3'- -UUGCGGGaaaua-----CGACGCCCgCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 127359 | 0.66 | 0.938735 |
Target: 5'- cACGCCCUccgugGUGCgcgGCaggugcgugaugaaGGGCGGcCACa -3' miRNA: 3'- uUGCGGGAaa---UACGa--CG--------------CCCGCU-GUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 148936 | 0.66 | 0.930389 |
Target: 5'- cAGCGCCgUgcuggcgcgUGUGCUGCuggaGGGCaGCGCc -3' miRNA: 3'- -UUGCGGgAa--------AUACGACG----CCCGcUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 118911 | 0.66 | 0.93538 |
Target: 5'- -uCGCCCUcgUcgGCgccgcggcGUGGGCGGCGg -3' miRNA: 3'- uuGCGGGAa-AuaCGa-------CGCCCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 130277 | 0.66 | 0.93538 |
Target: 5'- gGGCGCCCUcuccgGCUaccUGGGCGAgGCc -3' miRNA: 3'- -UUGCGGGAaaua-CGAc--GCCCGCUgUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 235198 | 0.66 | 0.940138 |
Target: 5'- cACGCCCU--GUGgUGCGacuGCGACGa -3' miRNA: 3'- uUGCGGGAaaUACgACGCc--CGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 132410 | 0.66 | 0.940138 |
Target: 5'- aGACGCUgUUUcgcCUGUGcGGCGACGCc -3' miRNA: 3'- -UUGCGGgAAAuacGACGC-CCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 207192 | 0.66 | 0.933412 |
Target: 5'- -cCGCCCcuccacggccUGUUGCuGGGCGACAg -3' miRNA: 3'- uuGCGGGaaau------ACGACG-CCCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 170492 | 0.66 | 0.94333 |
Target: 5'- cAACGCCCUgcugGacggcgucaccgccUcGCUGCuGGGCGACcuGCa -3' miRNA: 3'- -UUGCGGGAaa--U--------------A-CGACG-CCCGCUG--UG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 16035 | 0.66 | 0.925164 |
Target: 5'- cGCGuCCCgcacgacGUGgUGCGGGCGcugcuGCACa -3' miRNA: 3'- uUGC-GGGaaa----UACgACGCCCGC-----UGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 42557 | 0.66 | 0.948959 |
Target: 5'- cGACGCCCggcugGCUGUccGGCGGC-Cg -3' miRNA: 3'- -UUGCGGGaaauaCGACGc-CCGCUGuG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 105211 | 0.66 | 0.944663 |
Target: 5'- -cCGCCCgcga-GCUGCGcGGCGuCAa -3' miRNA: 3'- uuGCGGGaaauaCGACGC-CCGCuGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 122199 | 0.66 | 0.940138 |
Target: 5'- cGACGCCCUcgcgacuccAUGCUGCcuGCGAgCGCg -3' miRNA: 3'- -UUGCGGGAaa-------UACGACGccCGCU-GUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 151978 | 0.66 | 0.924629 |
Target: 5'- cACGCCC---GUGCUGUGcuacgacGGCGGCGu -3' miRNA: 3'- uUGCGGGaaaUACGACGC-------CCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 17004 | 0.66 | 0.944663 |
Target: 5'- aGGCGCCCgcg--GUgGCGG-CGGCGCa -3' miRNA: 3'- -UUGCGGGaaauaCGaCGCCcGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 36381 | 0.66 | 0.930389 |
Target: 5'- cGCGUgCUgcuuuccGUGCUGCuGGCGGCAg -3' miRNA: 3'- uUGCGgGAaa-----UACGACGcCCGCUGUg -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 13856 | 0.66 | 0.940601 |
Target: 5'- cGGCGCgggggucuCUGCGGGCGGCGCc -3' miRNA: 3'- -UUGCGggaaauacGACGCCCGCUGUG- -5' |
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14105 | 3' | -56 | NC_003521.1 | + | 144041 | 0.66 | 0.93538 |
Target: 5'- uAGCGCCgccgcUGCUGCcGGCGGCGa -3' miRNA: 3'- -UUGCGGgaaauACGACGcCCGCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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