Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 12440 | 0.68 | 0.966116 |
Target: 5'- aCUUCGACGUGUUUcgUCgcgaaauguGGCGUcuGGCCa -3' miRNA: 3'- -GGAGCUGCACAAGauGG---------UCGCA--CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 174836 | 0.68 | 0.966116 |
Target: 5'- --gCGACuUGgugu-CCGGCGUGGCCa -3' miRNA: 3'- ggaGCUGcACaagauGGUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 122634 | 0.68 | 0.966116 |
Target: 5'- gCUCGGCGgccccgacUUUGCCGGCG-GGCg -3' miRNA: 3'- gGAGCUGCaca-----AGAUGGUCGCaCCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 39848 | 0.68 | 0.962923 |
Target: 5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3' miRNA: 3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 233480 | 0.68 | 0.962923 |
Target: 5'- aCCU-GugGUGUUgaGCC-GCGaGGCCa -3' miRNA: 3'- -GGAgCugCACAAgaUGGuCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 145275 | 0.68 | 0.962923 |
Target: 5'- gCCUCGGCGgccagCUcgcgcGCCGGCGUcucGCCg -3' miRNA: 3'- -GGAGCUGCacaa-GA-----UGGUCGCAc--CGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 240075 | 0.68 | 0.962923 |
Target: 5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3' miRNA: 3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 113358 | 0.69 | 0.959526 |
Target: 5'- aUCUCGGCGcUGgcgggcgUCaacaacgGCCAGC-UGGCCg -3' miRNA: 3'- -GGAGCUGC-ACa------AGa------UGGUCGcACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 102562 | 0.69 | 0.958466 |
Target: 5'- aUCUCGugacGCGUGUaguagaacugcgucUCgggGCUGGCGcUGGCCa -3' miRNA: 3'- -GGAGC----UGCACA--------------AGa--UGGUCGC-ACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 142469 | 0.69 | 0.952102 |
Target: 5'- uCUUCGggucgaaaccGCGUcGUcUCUGCCAGCGcaaccaccgucgUGGCCg -3' miRNA: 3'- -GGAGC----------UGCA-CA-AGAUGGUCGC------------ACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 12754 | 0.69 | 0.948068 |
Target: 5'- gCCUCgGACGUGagCUGggacCCGcGCGUGcGCCc -3' miRNA: 3'- -GGAG-CUGCACaaGAU----GGU-CGCAC-CGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 18324 | 0.69 | 0.943816 |
Target: 5'- cCCagCGGCGUGgugCUGuuggaccaguUCGGCGUGGUCu -3' miRNA: 3'- -GGa-GCUGCACaa-GAU----------GGUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 111562 | 0.69 | 0.939342 |
Target: 5'- aCCUCGAgGUGcggCUgaGCCGGCG-GGUUc -3' miRNA: 3'- -GGAGCUgCACaa-GA--UGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 195329 | 0.69 | 0.939342 |
Target: 5'- aCggCGACGUGUagaaggCUGCCguGGUGgugGGCCg -3' miRNA: 3'- gGa-GCUGCACAa-----GAUGG--UCGCa--CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 180215 | 0.7 | 0.934646 |
Target: 5'- gCUCGGCGUugGUggUGCCGcGCGUgugGGCCu -3' miRNA: 3'- gGAGCUGCA--CAagAUGGU-CGCA---CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 170952 | 0.7 | 0.934646 |
Target: 5'- gCCUgGGCGUGgcgCUGCgCGGC--GGCCu -3' miRNA: 3'- -GGAgCUGCACaa-GAUG-GUCGcaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 43341 | 0.7 | 0.934646 |
Target: 5'- uCUUCGACGccugCUACCagAGCGaGGCCu -3' miRNA: 3'- -GGAGCUGCacaaGAUGG--UCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 210394 | 0.7 | 0.929725 |
Target: 5'- gCCUgGACaUGUUCagcugggACCgcAGCGUGGUCg -3' miRNA: 3'- -GGAgCUGcACAAGa------UGG--UCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 184959 | 0.7 | 0.929725 |
Target: 5'- aCUUCG-CGgcgGUgcggGCCAGCGUGGaCCu -3' miRNA: 3'- -GGAGCuGCa--CAaga-UGGUCGCACC-GG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 121579 | 0.7 | 0.91921 |
Target: 5'- aCCaCGcGCGUGUUCU-CCAGCGagcacaccagcUGGCUg -3' miRNA: 3'- -GGaGC-UGCACAAGAuGGUCGC-----------ACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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