miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 210010 0.66 0.98663
Target:  5'- gUUCG-CGgGUUUcGCCGGCG-GGCCc -3'
miRNA:   3'- gGAGCuGCaCAAGaUGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 224613 0.66 0.98663
Target:  5'- aCCugUCGACGUacgucGUUUuaggcuuaguUACCGGCucuuGUGGCCu -3'
miRNA:   3'- -GG--AGCUGCA-----CAAG----------AUGGUCG----CACCGG- -5'
14108 3' -53.9 NC_003521.1 + 100198 0.66 0.98663
Target:  5'- cUCUCGGcCGUGUaccgCUGCaGGuCGUaGGCCg -3'
miRNA:   3'- -GGAGCU-GCACAa---GAUGgUC-GCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 127312 0.66 0.98663
Target:  5'- gCCUCGAUGUuggcGUUggucagcggCUGCCGGUc-GGCCa -3'
miRNA:   3'- -GGAGCUGCA----CAA---------GAUGGUCGcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 164862 0.66 0.98663
Target:  5'- uCCUCGucggGgGUGUguaaCUACgAG-GUGGCCg -3'
miRNA:   3'- -GGAGC----UgCACAa---GAUGgUCgCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 77545 0.67 0.985003
Target:  5'- aCUgGACGUGguuUCUuccgacgagACCGGCGUcaaGGCg -3'
miRNA:   3'- gGAgCUGCACa--AGA---------UGGUCGCA---CCGg -5'
14108 3' -53.9 NC_003521.1 + 226161 0.67 0.985003
Target:  5'- aCUCGGCGUcGUUCagcGCgCAGaagGGCCa -3'
miRNA:   3'- gGAGCUGCA-CAAGa--UG-GUCgcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 13853 0.67 0.98323
Target:  5'- gCUCGGCGcggggGUcUCUGCgGGCG-GcGCCg -3'
miRNA:   3'- gGAGCUGCa----CA-AGAUGgUCGCaC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 210734 0.67 0.98323
Target:  5'- cCCUCGGCGcug-CUACC-GUGagcGGCCg -3'
miRNA:   3'- -GGAGCUGCacaaGAUGGuCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 93166 0.67 0.98323
Target:  5'- gCUCGACGUcccUCUACCGGgGcucgacGGUCg -3'
miRNA:   3'- gGAGCUGCAca-AGAUGGUCgCa-----CCGG- -5'
14108 3' -53.9 NC_003521.1 + 153478 0.67 0.983044
Target:  5'- uCCUCGGgcucCGgcucgGgccgUCUggucagcGCCAGCGUGGaCCg -3'
miRNA:   3'- -GGAGCU----GCa----Ca---AGA-------UGGUCGCACC-GG- -5'
14108 3' -53.9 NC_003521.1 + 130485 0.67 0.981302
Target:  5'- uCUUCGGCGac--CUGUCAcGCGUGGCCu -3'
miRNA:   3'- -GGAGCUGCacaaGAUGGU-CGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 181383 0.67 0.976957
Target:  5'- aCCUCGAgcucg-CUGCCGGCGgcgGcGCCg -3'
miRNA:   3'- -GGAGCUgcacaaGAUGGUCGCa--C-CGG- -5'
14108 3' -53.9 NC_003521.1 + 54507 0.67 0.976957
Target:  5'- gCC-CGGCGUGgaccaggaUCUGCaCGGCGccgcuggGGCCc -3'
miRNA:   3'- -GGaGCUGCACa-------AGAUG-GUCGCa------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 163799 0.67 0.976957
Target:  5'- cCUUCuACGgcUUC-ACCGGCGUGGUCa -3'
miRNA:   3'- -GGAGcUGCacAAGaUGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 16422 0.68 0.974525
Target:  5'- gCCggCGAgGUGU---ACCGGC-UGGCCg -3'
miRNA:   3'- -GGa-GCUgCACAagaUGGUCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 104576 0.68 0.974525
Target:  5'- aCgUCGGCGUag-CgGCCGGCGUGcGUCa -3'
miRNA:   3'- -GgAGCUGCAcaaGaUGGUCGCAC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 153796 0.68 0.974525
Target:  5'- aCUUCaggGugGUGUUCcuggucauCCAGCacGUGGCCc -3'
miRNA:   3'- -GGAG---CugCACAAGau------GGUCG--CACCGG- -5'
14108 3' -53.9 NC_003521.1 + 150925 0.68 0.969111
Target:  5'- uCCaCGGCGUGUgg-GCCgAGCGcGGUCa -3'
miRNA:   3'- -GGaGCUGCACAagaUGG-UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 122634 0.68 0.966116
Target:  5'- gCUCGGCGgccccgacUUUGCCGGCG-GGCg -3'
miRNA:   3'- gGAGCUGCaca-----AGAUGGUCGCaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.