miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 64484 0.66 0.992828
Target:  5'- --gUGACGUaaGUaCUGCCuauagauauaGGCGUGGCUa -3'
miRNA:   3'- ggaGCUGCA--CAaGAUGG----------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 72387 0.66 0.990705
Target:  5'- aCUCGGCGUccucgUCgaucACCAGCGgcggaGGCa -3'
miRNA:   3'- gGAGCUGCAca---AGa---UGGUCGCa----CCGg -5'
14108 3' -53.9 NC_003521.1 + 75095 0.7 0.913617
Target:  5'- cCCUCaacaACGUGUUCcGCgAG-GUGGCCc -3'
miRNA:   3'- -GGAGc---UGCACAAGaUGgUCgCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 75161 0.66 0.990705
Target:  5'- gCCUgGACGcaUGg--UGCCAGCGcGGCg -3'
miRNA:   3'- -GGAgCUGC--ACaagAUGGUCGCaCCGg -5'
14108 3' -53.9 NC_003521.1 + 77157 0.66 0.988117
Target:  5'- aUUCGugGUGguggugaUGCUgagaaggcuGCGUGGCCa -3'
miRNA:   3'- gGAGCugCACaag----AUGGu--------CGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 77545 0.67 0.985003
Target:  5'- aCUgGACGUGguuUCUuccgacgagACCGGCGUcaaGGCg -3'
miRNA:   3'- gGAgCUGCACa--AGA---------UGGUCGCA---CCGg -5'
14108 3' -53.9 NC_003521.1 + 77648 0.66 0.990705
Target:  5'- -aUCGACGUGUUggaaCUGCCGuCGggagacagcaGGCCg -3'
miRNA:   3'- ggAGCUGCACAA----GAUGGUcGCa---------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 83258 0.66 0.990469
Target:  5'- uCCUUGGCGUGggggagcacGCCugcguuaucgcaGGCGUaGGCCa -3'
miRNA:   3'- -GGAGCUGCACaaga-----UGG------------UCGCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 84764 0.68 0.966116
Target:  5'- gCUCGAUGUcGU----UgAGCGUGGCCa -3'
miRNA:   3'- gGAGCUGCA-CAagauGgUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 85368 0.72 0.861057
Target:  5'- aCCUCGACGggcugCUGcgacucgcCCAGCGggucGGCCa -3'
miRNA:   3'- -GGAGCUGCacaa-GAU--------GGUCGCa---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 86245 0.71 0.889033
Target:  5'- uCCUUGACGUGcagggcgaagUCgGCCGGCGaGGCg -3'
miRNA:   3'- -GGAGCUGCACa---------AGaUGGUCGCaCCGg -5'
14108 3' -53.9 NC_003521.1 + 93166 0.67 0.98323
Target:  5'- gCUCGACGUcccUCUACCGGgGcucgacGGUCg -3'
miRNA:   3'- gGAGCUGCAca-AGAUGGUCgCa-----CCGG- -5'
14108 3' -53.9 NC_003521.1 + 100198 0.66 0.98663
Target:  5'- cUCUCGGcCGUGUaccgCUGCaGGuCGUaGGCCg -3'
miRNA:   3'- -GGAGCU-GCACAa---GAUGgUC-GCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 100567 0.66 0.992828
Target:  5'- cCCUCGGCGUccgacUUACCGcCGUaggGGCCg -3'
miRNA:   3'- -GGAGCUGCAcaa--GAUGGUcGCA---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 102562 0.69 0.958466
Target:  5'- aUCUCGugacGCGUGUaguagaacugcgucUCgggGCUGGCGcUGGCCa -3'
miRNA:   3'- -GGAGC----UGCACA--------------AGa--UGGUCGC-ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 104576 0.68 0.974525
Target:  5'- aCgUCGGCGUag-CgGCCGGCGUGcGUCa -3'
miRNA:   3'- -GgAGCUGCAcaaGaUGGUCGCAC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 107159 0.73 0.820944
Target:  5'- -aUCGAUGUaGUUCUGCCGGagaaggaUGUGGCUc -3'
miRNA:   3'- ggAGCUGCA-CAAGAUGGUC-------GCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 111562 0.69 0.939342
Target:  5'- aCCUCGAgGUGcggCUgaGCCGGCG-GGUUc -3'
miRNA:   3'- -GGAGCUgCACaa-GA--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 113358 0.69 0.959526
Target:  5'- aUCUCGGCGcUGgcgggcgUCaacaacgGCCAGC-UGGCCg -3'
miRNA:   3'- -GGAGCUGC-ACa------AGa------UGGUCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 120042 0.66 0.991821
Target:  5'- aCC-CGGcCGUGUUCaccuggccCCAGUGgcaGGCCg -3'
miRNA:   3'- -GGaGCU-GCACAAGau------GGUCGCa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.