miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 107159 0.73 0.820944
Target:  5'- -aUCGAUGUaGUUCUGCCGGagaaggaUGUGGCUc -3'
miRNA:   3'- ggAGCUGCA-CAAGAUGGUC-------GCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 200325 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 86245 0.71 0.889033
Target:  5'- uCCUUGACGUGcagggcgaagUCgGCCGGCGaGGCg -3'
miRNA:   3'- -GGAGCUGCACa---------AGaUGGUCGCaCCGg -5'
14108 3' -53.9 NC_003521.1 + 129942 0.71 0.895505
Target:  5'- gCCgagaCGGCGcaGUUCUGCC-GCG-GGCCg -3'
miRNA:   3'- -GGa---GCUGCa-CAAGAUGGuCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 138008 0.71 0.899908
Target:  5'- aUCUCGGCGUcgaggugcgcgugcGUcgCUGCCGGCGcacggGGCUg -3'
miRNA:   3'- -GGAGCUGCA--------------CAa-GAUGGUCGCa----CCGG- -5'
14108 3' -53.9 NC_003521.1 + 102562 0.69 0.958466
Target:  5'- aUCUCGugacGCGUGUaguagaacugcgucUCgggGCUGGCGcUGGCCa -3'
miRNA:   3'- -GGAGC----UGCACA--------------AGa--UGGUCGC-ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 142469 0.69 0.952102
Target:  5'- uCUUCGggucgaaaccGCGUcGUcUCUGCCAGCGcaaccaccgucgUGGCCg -3'
miRNA:   3'- -GGAGC----------UGCA-CA-AGAUGGUCGC------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 111562 0.69 0.939342
Target:  5'- aCCUCGAgGUGcggCUgaGCCGGCG-GGUUc -3'
miRNA:   3'- -GGAGCUgCACaa-GA--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 43341 0.7 0.934646
Target:  5'- uCUUCGACGccugCUACCagAGCGaGGCCu -3'
miRNA:   3'- -GGAGCUGCacaaGAUGG--UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 121579 0.7 0.91921
Target:  5'- aCCaCGcGCGUGUUCU-CCAGCGagcacaccagcUGGCUg -3'
miRNA:   3'- -GGaGC-UGCACAAGAuGGUCGC-----------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 225171 0.71 0.901762
Target:  5'- aCCUCGGCGcUGUgCUGCCGcuCGaagaUGGCCu -3'
miRNA:   3'- -GGAGCUGC-ACAaGAUGGUc-GC----ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 97 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 85368 0.72 0.861057
Target:  5'- aCCUCGACGggcugCUGcgacucgcCCAGCGggucGGCCa -3'
miRNA:   3'- -GGAGCUGCacaa-GAU--------GGUCGCa---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 62340 0.73 0.821774
Target:  5'- gCUC-ACGUGUUUcgggACuaCAGCGUGGCCu -3'
miRNA:   3'- gGAGcUGCACAAGa---UG--GUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 170246 0.73 0.795333
Target:  5'- gCUCGGCGaccgGcUCUACCAGCGcuuucugcgcgagUGGCUg -3'
miRNA:   3'- gGAGCUGCa---CaAGAUGGUCGC-------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 183796 0.74 0.760209
Target:  5'- gCCUgggCGGCGUGUUC-AUCcGCGUGGCg -3'
miRNA:   3'- -GGA---GCUGCACAAGaUGGuCGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 139185 0.74 0.760209
Target:  5'- gCUCGcugaACGUGacgcgCUACCAGCGccgGGCCc -3'
miRNA:   3'- gGAGC----UGCACaa---GAUGGUCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 188255 0.79 0.492543
Target:  5'- cCCgcgCGACGUcUUCUGCCGGCGUcugcggaagaagaggGGCCu -3'
miRNA:   3'- -GGa--GCUGCAcAAGAUGGUCGCA---------------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 26438 0.8 0.461467
Target:  5'- aCCUgGGCGcUGUUCgugGCCugcaacGGCGUGGCCu -3'
miRNA:   3'- -GGAgCUGC-ACAAGa--UGG------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 171054 0.66 0.992828
Target:  5'- cCCUCGucgcCGUGguaUGCCgucAGUGcGGCCa -3'
miRNA:   3'- -GGAGCu---GCACaagAUGG---UCGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.