Results 1 - 20 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 77545 | 0.67 | 0.985003 |
Target: 5'- aCUgGACGUGguuUCUuccgacgagACCGGCGUcaaGGCg -3' miRNA: 3'- gGAgCUGCACa--AGA---------UGGUCGCA---CCGg -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 142469 | 0.69 | 0.952102 |
Target: 5'- uCUUCGggucgaaaccGCGUcGUcUCUGCCAGCGcaaccaccgucgUGGCCg -3' miRNA: 3'- -GGAGC----------UGCA-CA-AGAUGGUCGC------------ACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 102562 | 0.69 | 0.958466 |
Target: 5'- aUCUCGugacGCGUGUaguagaacugcgucUCgggGCUGGCGcUGGCCa -3' miRNA: 3'- -GGAGC----UGCACA--------------AGa--UGGUCGC-ACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 240075 | 0.68 | 0.962923 |
Target: 5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3' miRNA: 3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 145275 | 0.68 | 0.962923 |
Target: 5'- gCCUCGGCGgccagCUcgcgcGCCGGCGUcucGCCg -3' miRNA: 3'- -GGAGCUGCacaa-GA-----UGGUCGCAc--CGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 84764 | 0.68 | 0.966116 |
Target: 5'- gCUCGAUGUcGU----UgAGCGUGGCCa -3' miRNA: 3'- gGAGCUGCA-CAagauGgUCGCACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 150925 | 0.68 | 0.969111 |
Target: 5'- uCCaCGGCGUGUgg-GCCgAGCGcGGUCa -3' miRNA: 3'- -GGaGCUGCACAagaUGG-UCGCaCCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 54507 | 0.67 | 0.976957 |
Target: 5'- gCC-CGGCGUGgaccaggaUCUGCaCGGCGccgcuggGGCCc -3' miRNA: 3'- -GGaGCUGCACa-------AGAUG-GUCGCa------CCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 93166 | 0.67 | 0.98323 |
Target: 5'- gCUCGACGUcccUCUACCGGgGcucgacGGUCg -3' miRNA: 3'- gGAGCUGCAca-AGAUGGUCgCa-----CCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 111562 | 0.69 | 0.939342 |
Target: 5'- aCCUCGAgGUGcggCUgaGCCGGCG-GGUUc -3' miRNA: 3'- -GGAGCUgCACaa-GA--UGGUCGCaCCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 43341 | 0.7 | 0.934646 |
Target: 5'- uCUUCGACGccugCUACCagAGCGaGGCCu -3' miRNA: 3'- -GGAGCUGCacaaGAUGG--UCGCaCCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 121579 | 0.7 | 0.91921 |
Target: 5'- aCCaCGcGCGUGUUCU-CCAGCGagcacaccagcUGGCUg -3' miRNA: 3'- -GGaGC-UGCACAAGAuGGUCGC-----------ACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 62410 | 0.76 | 0.683634 |
Target: 5'- aCCUCGGCGg---CUACCAGUGUcugGGCa -3' miRNA: 3'- -GGAGCUGCacaaGAUGGUCGCA---CCGg -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 153405 | 0.74 | 0.769389 |
Target: 5'- uCCUCGugcAgGUGcgCcACCGGCGUGGUCa -3' miRNA: 3'- -GGAGC---UgCACaaGaUGGUCGCACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 107159 | 0.73 | 0.820944 |
Target: 5'- -aUCGAUGUaGUUCUGCCGGagaaggaUGUGGCUc -3' miRNA: 3'- ggAGCUGCA-CAAGAUGGUC-------GCACCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 200325 | 0.71 | 0.882347 |
Target: 5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3' miRNA: 3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 86245 | 0.71 | 0.889033 |
Target: 5'- uCCUUGACGUGcagggcgaagUCgGCCGGCGaGGCg -3' miRNA: 3'- -GGAGCUGCACa---------AGaUGGUCGCaCCGg -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 129942 | 0.71 | 0.895505 |
Target: 5'- gCCgagaCGGCGcaGUUCUGCC-GCG-GGCCg -3' miRNA: 3'- -GGa---GCUGCa-CAAGAUGGuCGCaCCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 138008 | 0.71 | 0.899908 |
Target: 5'- aUCUCGGCGUcgaggugcgcgugcGUcgCUGCCGGCGcacggGGCUg -3' miRNA: 3'- -GGAGCUGCA--------------CAa-GAUGGUCGCa----CCGG- -5' |
|||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 225171 | 0.71 | 0.901762 |
Target: 5'- aCCUCGGCGcUGUgCUGCCGcuCGaagaUGGCCu -3' miRNA: 3'- -GGAGCUGC-ACAaGAUGGUc-GC----ACCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home