miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 125667 1.14 0.004559
Target:  5'- uCCUCGACGUGUUCUACCAGCGUGGCCu -3'
miRNA:   3'- -GGAGCUGCACAAGAUGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 170952 0.7 0.934646
Target:  5'- gCCUgGGCGUGgcgCUGCgCGGC--GGCCu -3'
miRNA:   3'- -GGAgCUGCACaa-GAUG-GUCGcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 195329 0.69 0.939342
Target:  5'- aCggCGACGUGUagaaggCUGCCguGGUGgugGGCCg -3'
miRNA:   3'- gGa-GCUGCACAa-----GAUGG--UCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 171054 0.66 0.992828
Target:  5'- cCCUCGucgcCGUGguaUGCCgucAGUGcGGCCa -3'
miRNA:   3'- -GGAGCu---GCACaagAUGG---UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 183796 0.74 0.760209
Target:  5'- gCCUgggCGGCGUGUUC-AUCcGCGUGGCg -3'
miRNA:   3'- -GGA---GCUGCACAAGaUGGuCGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 170246 0.73 0.795333
Target:  5'- gCUCGGCGaccgGcUCUACCAGCGcuuucugcgcgagUGGCUg -3'
miRNA:   3'- gGAGCUGCa---CaAGAUGGUCGC-------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 85368 0.72 0.861057
Target:  5'- aCCUCGACGggcugCUGcgacucgcCCAGCGggucGGCCa -3'
miRNA:   3'- -GGAGCUGCacaa-GAU--------GGUCGCa---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 97 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 22390 0.71 0.907206
Target:  5'- uCCUcCGugGUGccgccgcugucgcUggccaugCUGCgCGGCGUGGCCg -3'
miRNA:   3'- -GGA-GCugCAC-------------Aa------GAUG-GUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 210394 0.7 0.929725
Target:  5'- gCCUgGACaUGUUCagcugggACCgcAGCGUGGUCg -3'
miRNA:   3'- -GGAgCUGcACAAGa------UGG--UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 169143 0.71 0.9078
Target:  5'- gCCUaCGGCGUGcUC-ACCAaguGCGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaAGaUGGU---CGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 183670 0.71 0.889033
Target:  5'- --cCGACGac--CUGCCGcGCGUGGCCg -3'
miRNA:   3'- ggaGCUGCacaaGAUGGU-CGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 26438 0.8 0.461467
Target:  5'- aCCUgGGCGcUGUUCgugGCCugcaacGGCGUGGCCu -3'
miRNA:   3'- -GGAgCUGC-ACAAGa--UGG------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 75095 0.7 0.913617
Target:  5'- cCCUCaacaACGUGUUCcGCgAG-GUGGCCc -3'
miRNA:   3'- -GGAGc---UGCACAAGaUGgUCgCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 188255 0.79 0.492543
Target:  5'- cCCgcgCGACGUcUUCUGCCGGCGUcugcggaagaagaggGGCCu -3'
miRNA:   3'- -GGa--GCUGCAcAAGAUGGUCGCA---------------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 240646 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 184959 0.7 0.929725
Target:  5'- aCUUCG-CGgcgGUgcggGCCAGCGUGGaCCu -3'
miRNA:   3'- -GGAGCuGCa--CAaga-UGGUCGCACC-GG- -5'
14108 3' -53.9 NC_003521.1 + 180215 0.7 0.934646
Target:  5'- gCUCGGCGUugGUggUGCCGcGCGUgugGGCCu -3'
miRNA:   3'- gGAGCUGCA--CAagAUGGU-CGCA---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 139185 0.74 0.760209
Target:  5'- gCUCGcugaACGUGacgcgCUACCAGCGccgGGCCc -3'
miRNA:   3'- gGAGC----UGCACaa---GAUGGUCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 62340 0.73 0.821774
Target:  5'- gCUC-ACGUGUUUcgggACuaCAGCGUGGCCu -3'
miRNA:   3'- gGAGcUGCACAAGa---UG--GUCGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.