Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 125667 | 1.14 | 0.004559 |
Target: 5'- uCCUCGACGUGUUCUACCAGCGUGGCCu -3' miRNA: 3'- -GGAGCUGCACAAGAUGGUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 26438 | 0.8 | 0.461467 |
Target: 5'- aCCUgGGCGcUGUUCgugGCCugcaacGGCGUGGCCu -3' miRNA: 3'- -GGAgCUGC-ACAAGa--UGG------UCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 188255 | 0.79 | 0.492543 |
Target: 5'- cCCgcgCGACGUcUUCUGCCGGCGUcugcggaagaagaggGGCCu -3' miRNA: 3'- -GGa--GCUGCAcAAGAUGGUCGCA---------------CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 230935 | 0.78 | 0.565108 |
Target: 5'- cUCUCGaaGCGUGgUUCUGCCAGCGUccauGCCu -3' miRNA: 3'- -GGAGC--UGCAC-AAGAUGGUCGCAc---CGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 62410 | 0.76 | 0.683634 |
Target: 5'- aCCUCGGCGg---CUACCAGUGUcugGGCa -3' miRNA: 3'- -GGAGCUGCacaaGAUGGUCGCA---CCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 139185 | 0.74 | 0.760209 |
Target: 5'- gCUCGcugaACGUGacgcgCUACCAGCGccgGGCCc -3' miRNA: 3'- gGAGC----UGCACaa---GAUGGUCGCa--CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 183796 | 0.74 | 0.760209 |
Target: 5'- gCCUgggCGGCGUGUUC-AUCcGCGUGGCg -3' miRNA: 3'- -GGA---GCUGCACAAGaUGGuCGCACCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 153405 | 0.74 | 0.769389 |
Target: 5'- uCCUCGugcAgGUGcgCcACCGGCGUGGUCa -3' miRNA: 3'- -GGAGC---UgCACaaGaUGGUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 170246 | 0.73 | 0.795333 |
Target: 5'- gCUCGGCGaccgGcUCUACCAGCGcuuucugcgcgagUGGCUg -3' miRNA: 3'- gGAGCUGCa---CaAGAUGGUCGC-------------ACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 107159 | 0.73 | 0.820944 |
Target: 5'- -aUCGAUGUaGUUCUGCCGGagaaggaUGUGGCUc -3' miRNA: 3'- ggAGCUGCA-CAAGAUGGUC-------GCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 62340 | 0.73 | 0.821774 |
Target: 5'- gCUC-ACGUGUUUcgggACuaCAGCGUGGCCu -3' miRNA: 3'- gGAGcUGCACAAGa---UG--GUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 85368 | 0.72 | 0.861057 |
Target: 5'- aCCUCGACGggcugCUGcgacucgcCCAGCGggucGGCCa -3' miRNA: 3'- -GGAGCUGCacaa-GAU--------GGUCGCa---CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 200325 | 0.71 | 0.882347 |
Target: 5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3' miRNA: 3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 97 | 0.71 | 0.882347 |
Target: 5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3' miRNA: 3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 240646 | 0.71 | 0.882347 |
Target: 5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3' miRNA: 3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 86245 | 0.71 | 0.889033 |
Target: 5'- uCCUUGACGUGcagggcgaagUCgGCCGGCGaGGCg -3' miRNA: 3'- -GGAGCUGCACa---------AGaUGGUCGCaCCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 183670 | 0.71 | 0.889033 |
Target: 5'- --cCGACGac--CUGCCGcGCGUGGCCg -3' miRNA: 3'- ggaGCUGCacaaGAUGGU-CGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 129942 | 0.71 | 0.895505 |
Target: 5'- gCCgagaCGGCGcaGUUCUGCC-GCG-GGCCg -3' miRNA: 3'- -GGa---GCUGCa-CAAGAUGGuCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 138008 | 0.71 | 0.899908 |
Target: 5'- aUCUCGGCGUcgaggugcgcgugcGUcgCUGCCGGCGcacggGGCUg -3' miRNA: 3'- -GGAGCUGCA--------------CAa-GAUGGUCGCa----CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 225171 | 0.71 | 0.901762 |
Target: 5'- aCCUCGGCGcUGUgCUGCCGcuCGaagaUGGCCu -3' miRNA: 3'- -GGAGCUGC-ACAaGAUGGUc-GC----ACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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