Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14108 | 3' | -53.9 | NC_003521.1 | + | 224613 | 0.66 | 0.98663 |
Target: 5'- aCCugUCGACGUacgucGUUUuaggcuuaguUACCGGCucuuGUGGCCu -3' miRNA: 3'- -GG--AGCUGCA-----CAAG----------AUGGUCG----CACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 171054 | 0.66 | 0.992828 |
Target: 5'- cCCUCGucgcCGUGguaUGCCgucAGUGcGGCCa -3' miRNA: 3'- -GGAGCu---GCACaagAUGG---UCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 16207 | 0.66 | 0.989473 |
Target: 5'- cCUUCGAgGUGgcggcgccCUGCC-GCcUGGCCg -3' miRNA: 3'- -GGAGCUgCACaa------GAUGGuCGcACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 210010 | 0.66 | 0.98663 |
Target: 5'- gUUCG-CGgGUUUcGCCGGCG-GGCCc -3' miRNA: 3'- gGAGCuGCaCAAGaUGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 37649 | 0.66 | 0.988117 |
Target: 5'- aUCUgGugGUGgcauUCUGCCGGCacgacgGGCa -3' miRNA: 3'- -GGAgCugCACa---AGAUGGUCGca----CCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 77157 | 0.66 | 0.988117 |
Target: 5'- aUUCGugGUGguggugaUGCUgagaaggcuGCGUGGCCa -3' miRNA: 3'- gGAGCugCACaag----AUGGu--------CGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 75161 | 0.66 | 0.990705 |
Target: 5'- gCCUgGACGcaUGg--UGCCAGCGcGGCg -3' miRNA: 3'- -GGAgCUGC--ACaagAUGGUCGCaCCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 48628 | 0.66 | 0.988946 |
Target: 5'- uCCgcCGACGaaacccaaACCGGUGUGGCCg -3' miRNA: 3'- -GGa-GCUGCacaaga--UGGUCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 22309 | 0.66 | 0.989473 |
Target: 5'- aCCUUcACGg--UCUGCCuGC-UGGCCu -3' miRNA: 3'- -GGAGcUGCacaAGAUGGuCGcACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 164862 | 0.66 | 0.98663 |
Target: 5'- uCCUCGucggGgGUGUguaaCUACgAG-GUGGCCg -3' miRNA: 3'- -GGAGC----UgCACAa---GAUGgUCgCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 176613 | 0.66 | 0.990705 |
Target: 5'- uCCUCG-CG----CUGCU-GCGUGGCCa -3' miRNA: 3'- -GGAGCuGCacaaGAUGGuCGCACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 100567 | 0.66 | 0.992828 |
Target: 5'- cCCUCGGCGUccgacUUACCGcCGUaggGGCCg -3' miRNA: 3'- -GGAGCUGCAcaa--GAUGGUcGCA---CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 100198 | 0.66 | 0.98663 |
Target: 5'- cUCUCGGcCGUGUaccgCUGCaGGuCGUaGGCCg -3' miRNA: 3'- -GGAGCU-GCACAa---GAUGgUC-GCA-CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 127312 | 0.66 | 0.98663 |
Target: 5'- gCCUCGAUGUuggcGUUggucagcggCUGCCGGUc-GGCCa -3' miRNA: 3'- -GGAGCUGCA----CAA---------GAUGGUCGcaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 5530 | 0.66 | 0.988117 |
Target: 5'- --gCGACG-GUgacggCaGCCGGCGcGGCCg -3' miRNA: 3'- ggaGCUGCaCAa----GaUGGUCGCaCCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 72387 | 0.66 | 0.990705 |
Target: 5'- aCUCGGCGUccucgUCgaucACCAGCGgcggaGGCa -3' miRNA: 3'- gGAGCUGCAca---AGa---UGGUCGCa----CCGg -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 77648 | 0.66 | 0.990705 |
Target: 5'- -aUCGACGUGUUggaaCUGCCGuCGggagacagcaGGCCg -3' miRNA: 3'- ggAGCUGCACAA----GAUGGUcGCa---------CCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 11726 | 0.66 | 0.992828 |
Target: 5'- uCUUCGAgcaGUUCUACCAcgGUuUGGCCa -3' miRNA: 3'- -GGAGCUgcaCAAGAUGGU--CGcACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 129219 | 0.66 | 0.989473 |
Target: 5'- --gCGugGUGggCaguCCGGCGccgcUGGCCa -3' miRNA: 3'- ggaGCugCACaaGau-GGUCGC----ACCGG- -5' |
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14108 | 3' | -53.9 | NC_003521.1 | + | 83258 | 0.66 | 0.990469 |
Target: 5'- uCCUUGGCGUGggggagcacGCCugcguuaucgcaGGCGUaGGCCa -3' miRNA: 3'- -GGAGCUGCACaaga-----UGG------------UCGCA-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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