miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 97 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 5530 0.66 0.988117
Target:  5'- --gCGACG-GUgacggCaGCCGGCGcGGCCg -3'
miRNA:   3'- ggaGCUGCaCAa----GaUGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 11726 0.66 0.992828
Target:  5'- uCUUCGAgcaGUUCUACCAcgGUuUGGCCa -3'
miRNA:   3'- -GGAGCUgcaCAAGAUGGU--CGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 12440 0.68 0.966116
Target:  5'- aCUUCGACGUGUUUcgUCgcgaaauguGGCGUcuGGCCa -3'
miRNA:   3'- -GGAGCUGCACAAGauGG---------UCGCA--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 12754 0.69 0.948068
Target:  5'- gCCUCgGACGUGagCUGggacCCGcGCGUGcGCCc -3'
miRNA:   3'- -GGAG-CUGCACaaGAU----GGU-CGCAC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 13853 0.67 0.98323
Target:  5'- gCUCGGCGcggggGUcUCUGCgGGCG-GcGCCg -3'
miRNA:   3'- gGAGCUGCa----CA-AGAUGgUCGCaC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 16207 0.66 0.989473
Target:  5'- cCUUCGAgGUGgcggcgccCUGCC-GCcUGGCCg -3'
miRNA:   3'- -GGAGCUgCACaa------GAUGGuCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 16422 0.68 0.974525
Target:  5'- gCCggCGAgGUGU---ACCGGC-UGGCCg -3'
miRNA:   3'- -GGa-GCUgCACAagaUGGUCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 18324 0.69 0.943816
Target:  5'- cCCagCGGCGUGgugCUGuuggaccaguUCGGCGUGGUCu -3'
miRNA:   3'- -GGa-GCUGCACaa-GAU----------GGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 22309 0.66 0.989473
Target:  5'- aCCUUcACGg--UCUGCCuGC-UGGCCu -3'
miRNA:   3'- -GGAGcUGCacaAGAUGGuCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 22390 0.71 0.907206
Target:  5'- uCCUcCGugGUGccgccgcugucgcUggccaugCUGCgCGGCGUGGCCg -3'
miRNA:   3'- -GGA-GCugCAC-------------Aa------GAUG-GUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 26438 0.8 0.461467
Target:  5'- aCCUgGGCGcUGUUCgugGCCugcaacGGCGUGGCCu -3'
miRNA:   3'- -GGAgCUGC-ACAAGa--UGG------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 37649 0.66 0.988117
Target:  5'- aUCUgGugGUGgcauUCUGCCGGCacgacgGGCa -3'
miRNA:   3'- -GGAgCugCACa---AGAUGGUCGca----CCGg -5'
14108 3' -53.9 NC_003521.1 + 39848 0.68 0.962923
Target:  5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 43341 0.7 0.934646
Target:  5'- uCUUCGACGccugCUACCagAGCGaGGCCu -3'
miRNA:   3'- -GGAGCUGCacaaGAUGG--UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 48308 0.71 0.9078
Target:  5'- uCUUCGACGUcgUCagauucgagcagUACCAGCGUGGaCa -3'
miRNA:   3'- -GGAGCUGCAcaAG------------AUGGUCGCACCgG- -5'
14108 3' -53.9 NC_003521.1 + 48628 0.66 0.988946
Target:  5'- uCCgcCGACGaaacccaaACCGGUGUGGCCg -3'
miRNA:   3'- -GGa-GCUGCacaaga--UGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 54507 0.67 0.976957
Target:  5'- gCC-CGGCGUGgaccaggaUCUGCaCGGCGccgcuggGGCCc -3'
miRNA:   3'- -GGaGCUGCACa-------AGAUG-GUCGCa------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 62340 0.73 0.821774
Target:  5'- gCUC-ACGUGUUUcgggACuaCAGCGUGGCCu -3'
miRNA:   3'- gGAGcUGCACAAGa---UG--GUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 62410 0.76 0.683634
Target:  5'- aCCUCGGCGg---CUACCAGUGUcugGGCa -3'
miRNA:   3'- -GGAGCUGCacaaGAUGGUCGCA---CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.