miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 240646 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 240075 0.68 0.962923
Target:  5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 233758 0.66 0.991715
Target:  5'- gCUCGuagaUGUUUUGCUuuuuacuGGCGUGGCUg -3'
miRNA:   3'- gGAGCugc-ACAAGAUGG-------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 233480 0.68 0.962923
Target:  5'- aCCU-GugGUGUUgaGCC-GCGaGGCCa -3'
miRNA:   3'- -GGAgCugCACAAgaUGGuCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 230935 0.78 0.565108
Target:  5'- cUCUCGaaGCGUGgUUCUGCCAGCGUccauGCCu -3'
miRNA:   3'- -GGAGC--UGCAC-AAGAUGGUCGCAc---CGG- -5'
14108 3' -53.9 NC_003521.1 + 226161 0.67 0.985003
Target:  5'- aCUCGGCGUcGUUCagcGCgCAGaagGGCCa -3'
miRNA:   3'- gGAGCUGCA-CAAGa--UG-GUCgcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 225171 0.71 0.901762
Target:  5'- aCCUCGGCGcUGUgCUGCCGcuCGaagaUGGCCu -3'
miRNA:   3'- -GGAGCUGC-ACAaGAUGGUc-GC----ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 224613 0.66 0.98663
Target:  5'- aCCugUCGACGUacgucGUUUuaggcuuaguUACCGGCucuuGUGGCCu -3'
miRNA:   3'- -GG--AGCUGCA-----CAAG----------AUGGUCG----CACCGG- -5'
14108 3' -53.9 NC_003521.1 + 210734 0.67 0.98323
Target:  5'- cCCUCGGCGcug-CUACC-GUGagcGGCCg -3'
miRNA:   3'- -GGAGCUGCacaaGAUGGuCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 210394 0.7 0.929725
Target:  5'- gCCUgGACaUGUUCagcugggACCgcAGCGUGGUCg -3'
miRNA:   3'- -GGAgCUGcACAAGa------UGG--UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 210010 0.66 0.98663
Target:  5'- gUUCG-CGgGUUUcGCCGGCG-GGCCc -3'
miRNA:   3'- gGAGCuGCaCAAGaUGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 200325 0.71 0.882347
Target:  5'- -gUCgGACGUGUUUcggGCCGGCG-GGUCg -3'
miRNA:   3'- ggAG-CUGCACAAGa--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 195329 0.69 0.939342
Target:  5'- aCggCGACGUGUagaaggCUGCCguGGUGgugGGCCg -3'
miRNA:   3'- gGa-GCUGCACAa-----GAUGG--UCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 188255 0.79 0.492543
Target:  5'- cCCgcgCGACGUcUUCUGCCGGCGUcugcggaagaagaggGGCCu -3'
miRNA:   3'- -GGa--GCUGCAcAAGAUGGUCGCA---------------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 184959 0.7 0.929725
Target:  5'- aCUUCG-CGgcgGUgcggGCCAGCGUGGaCCu -3'
miRNA:   3'- -GGAGCuGCa--CAaga-UGGUCGCACC-GG- -5'
14108 3' -53.9 NC_003521.1 + 183796 0.74 0.760209
Target:  5'- gCCUgggCGGCGUGUUC-AUCcGCGUGGCg -3'
miRNA:   3'- -GGA---GCUGCACAAGaUGGuCGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 183670 0.71 0.889033
Target:  5'- --cCGACGac--CUGCCGcGCGUGGCCg -3'
miRNA:   3'- ggaGCUGCacaaGAUGGU-CGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 181383 0.67 0.976957
Target:  5'- aCCUCGAgcucg-CUGCCGGCGgcgGcGCCg -3'
miRNA:   3'- -GGAGCUgcacaaGAUGGUCGCa--C-CGG- -5'
14108 3' -53.9 NC_003521.1 + 180215 0.7 0.934646
Target:  5'- gCUCGGCGUugGUggUGCCGcGCGUgugGGCCu -3'
miRNA:   3'- gGAGCUGCA--CAagAUGGU-CGCA---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 176613 0.66 0.990705
Target:  5'- uCCUCG-CG----CUGCU-GCGUGGCCa -3'
miRNA:   3'- -GGAGCuGCacaaGAUGGuCGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.