miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 22390 0.71 0.907206
Target:  5'- uCCUcCGugGUGccgccgcugucgcUggccaugCUGCgCGGCGUGGCCg -3'
miRNA:   3'- -GGA-GCugCAC-------------Aa------GAUG-GUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 169143 0.71 0.9078
Target:  5'- gCCUaCGGCGUGcUC-ACCAaguGCGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaAGaUGGU---CGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 48308 0.71 0.9078
Target:  5'- uCUUCGACGUcgUCagauucgagcagUACCAGCGUGGaCa -3'
miRNA:   3'- -GGAGCUGCAcaAG------------AUGGUCGCACCgG- -5'
14108 3' -53.9 NC_003521.1 + 75095 0.7 0.913617
Target:  5'- cCCUCaacaACGUGUUCcGCgAG-GUGGCCc -3'
miRNA:   3'- -GGAGc---UGCACAAGaUGgUCgCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 121579 0.7 0.91921
Target:  5'- aCCaCGcGCGUGUUCU-CCAGCGagcacaccagcUGGCUg -3'
miRNA:   3'- -GGaGC-UGCACAAGAuGGUCGC-----------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 184959 0.7 0.929725
Target:  5'- aCUUCG-CGgcgGUgcggGCCAGCGUGGaCCu -3'
miRNA:   3'- -GGAGCuGCa--CAaga-UGGUCGCACC-GG- -5'
14108 3' -53.9 NC_003521.1 + 210394 0.7 0.929725
Target:  5'- gCCUgGACaUGUUCagcugggACCgcAGCGUGGUCg -3'
miRNA:   3'- -GGAgCUGcACAAGa------UGG--UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 180215 0.7 0.934646
Target:  5'- gCUCGGCGUugGUggUGCCGcGCGUgugGGCCu -3'
miRNA:   3'- gGAGCUGCA--CAagAUGGU-CGCA---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 170952 0.7 0.934646
Target:  5'- gCCUgGGCGUGgcgCUGCgCGGC--GGCCu -3'
miRNA:   3'- -GGAgCUGCACaa-GAUG-GUCGcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 43341 0.7 0.934646
Target:  5'- uCUUCGACGccugCUACCagAGCGaGGCCu -3'
miRNA:   3'- -GGAGCUGCacaaGAUGG--UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 111562 0.69 0.939342
Target:  5'- aCCUCGAgGUGcggCUgaGCCGGCG-GGUUc -3'
miRNA:   3'- -GGAGCUgCACaa-GA--UGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 195329 0.69 0.939342
Target:  5'- aCggCGACGUGUagaaggCUGCCguGGUGgugGGCCg -3'
miRNA:   3'- gGa-GCUGCACAa-----GAUGG--UCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 18324 0.69 0.943816
Target:  5'- cCCagCGGCGUGgugCUGuuggaccaguUCGGCGUGGUCu -3'
miRNA:   3'- -GGa-GCUGCACaa-GAU----------GGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 12754 0.69 0.948068
Target:  5'- gCCUCgGACGUGagCUGggacCCGcGCGUGcGCCc -3'
miRNA:   3'- -GGAG-CUGCACaaGAU----GGU-CGCAC-CGG- -5'
14108 3' -53.9 NC_003521.1 + 142469 0.69 0.952102
Target:  5'- uCUUCGggucgaaaccGCGUcGUcUCUGCCAGCGcaaccaccgucgUGGCCg -3'
miRNA:   3'- -GGAGC----------UGCA-CA-AGAUGGUCGC------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 102562 0.69 0.958466
Target:  5'- aUCUCGugacGCGUGUaguagaacugcgucUCgggGCUGGCGcUGGCCa -3'
miRNA:   3'- -GGAGC----UGCACA--------------AGa--UGGUCGC-ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 113358 0.69 0.959526
Target:  5'- aUCUCGGCGcUGgcgggcgUCaacaacgGCCAGC-UGGCCg -3'
miRNA:   3'- -GGAGCUGC-ACa------AGa------UGGUCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 145275 0.68 0.962923
Target:  5'- gCCUCGGCGgccagCUcgcgcGCCGGCGUcucGCCg -3'
miRNA:   3'- -GGAGCUGCacaa-GA-----UGGUCGCAc--CGG- -5'
14108 3' -53.9 NC_003521.1 + 240075 0.68 0.962923
Target:  5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 39848 0.68 0.962923
Target:  5'- gCCUcCGGCGUGgggCUugCA-CGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaa-GAugGUcGCACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.