miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 214567 0.66 0.8339
Target:  5'- cUGGGGugcagcaGCGCUGGCGuuccgugCGCGACGaGGg -3'
miRNA:   3'- cACCUC-------UGCGGCCGCca-----GUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 91188 0.66 0.832359
Target:  5'- -aGGAGAgcaccuCGCCGGCGGcguccagcgccguuUCGCGcAUGaGGg -3'
miRNA:   3'- caCCUCU------GCGGCCGCC--------------AGUGC-UGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 163960 0.67 0.826918
Target:  5'- -cGGccgcGGACGCCgaagauGGCGGUCGC--CGGGc -3'
miRNA:   3'- caCC----UCUGCGG------CCGCCAGUGcuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 163377 0.67 0.826918
Target:  5'- -aGGAG-CGCCGGCccgaaaACGACGGu -3'
miRNA:   3'- caCCUCuGCGGCCGccag--UGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 134448 0.67 0.826918
Target:  5'- -cGGAGGaGgCGGCGGagAUGGCGGu -3'
miRNA:   3'- caCCUCUgCgGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 167705 0.67 0.826918
Target:  5'- cGUGGAGGaGgCGGCGGUagcaGCGGuagugguagacCGGGu -3'
miRNA:   3'- -CACCUCUgCgGCCGCCAg---UGCU-----------GCCC- -5'
14108 5' -60.5 NC_003521.1 + 84254 0.67 0.826918
Target:  5'- gGUGGAuGCGauGGCGGUCGC--UGGGc -3'
miRNA:   3'- -CACCUcUGCggCCGCCAGUGcuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 127058 0.67 0.826918
Target:  5'- aUGGAGACG-CGGUGc-CGCGGCaGGGc -3'
miRNA:   3'- cACCUCUGCgGCCGCcaGUGCUG-CCC- -5'
14108 5' -60.5 NC_003521.1 + 60737 0.67 0.826134
Target:  5'- uUGGGcaagaacGGCGgCGGCaGUCGCcGCGGGa -3'
miRNA:   3'- cACCU-------CUGCgGCCGcCAGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 46811 0.67 0.819015
Target:  5'- cUGGAuGACGCCGccgcCGGUgACGACGc- -3'
miRNA:   3'- cACCU-CUGCGGCc---GCCAgUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 17757 0.67 0.819015
Target:  5'- -cGGGGAacuggccguacCGCCGGCGG-CG-GACGGu -3'
miRNA:   3'- caCCUCU-----------GCGGCCGCCaGUgCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 170191 0.67 0.819015
Target:  5'- -cGGuGGUGCCGGUGGagguaguggCACGAgGGGu -3'
miRNA:   3'- caCCuCUGCGGCCGCCa--------GUGCUgCCC- -5'
14108 5' -60.5 NC_003521.1 + 77240 0.67 0.819015
Target:  5'- cUGuAGACGUCGGCGGgguCcACGGGg -3'
miRNA:   3'- cACcUCUGCGGCCGCCaguGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 18728 0.67 0.819015
Target:  5'- --cGAGACgcuGCCGGCGcugCAgGGCGGGc -3'
miRNA:   3'- cacCUCUG---CGGCCGCca-GUgCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 104016 0.67 0.819015
Target:  5'- -----cACGCCGG-GGUCGuCGGCGGGc -3'
miRNA:   3'- caccucUGCGGCCgCCAGU-GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 105691 0.67 0.814204
Target:  5'- aUGGGGugGCUgcccaccagcagguaGGCGaa-GCGGCGGGu -3'
miRNA:   3'- cACCUCugCGG---------------CCGCcagUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 53164 0.67 0.810967
Target:  5'- -cGGGGACGgCGGCgaggaGGUCGgCGACGc- -3'
miRNA:   3'- caCCUCUGCgGCCG-----CCAGU-GCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 21950 0.67 0.810967
Target:  5'- cUGGAG-CaGUgGGCGaG-CGCGGCGGGa -3'
miRNA:   3'- cACCUCuG-CGgCCGC-CaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 227606 0.67 0.810967
Target:  5'- -aGGcuuGGGCGCCGGuCGGcccuccaaCACGGCGGc -3'
miRNA:   3'- caCC---UCUGCGGCC-GCCa-------GUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 215642 0.67 0.810967
Target:  5'- -cGG-GGCuCCGcaUGGUCGCGGCGGGa -3'
miRNA:   3'- caCCuCUGcGGCc-GCCAGUGCUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.