miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 178031 0.66 0.856228
Target:  5'- -cGGucgucaaAGACGCCGGgcccgucaggcUGGUgGgGACGGGa -3'
miRNA:   3'- caCC-------UCUGCGGCC-----------GCCAgUgCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 86339 0.66 0.852612
Target:  5'- cUGGAGgucuugccgGCGCCGGCGGUgccggugaccaacaGCGuGCGGa -3'
miRNA:   3'- cACCUC---------UGCGGCCGCCAg-------------UGC-UGCCc -5'
14108 5' -60.5 NC_003521.1 + 155641 0.66 0.849688
Target:  5'- gGUGGuAGcagaaGCGCCGuGCugGGUgGCGGCGGa -3'
miRNA:   3'- -CACC-UC-----UGCGGC-CG--CCAgUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 145035 0.66 0.849688
Target:  5'- cUGGAucgcGugGCCGaGCGG-CACGAUGa- -3'
miRNA:   3'- cACCU----CugCGGC-CGCCaGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 131074 0.66 0.849688
Target:  5'- nGUGGcGGCGaCC-GCGGcUCGCG-CGGGc -3'
miRNA:   3'- -CACCuCUGC-GGcCGCC-AGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 161494 0.66 0.849688
Target:  5'- -cGcGAGACcCUGGUgGGUCGCGugGuGGg -3'
miRNA:   3'- caC-CUCUGcGGCCG-CCAGUGCugC-CC- -5'
14108 5' -60.5 NC_003521.1 + 57408 0.66 0.848953
Target:  5'- -----aGCGCCGuGCGGUCGCccaccgucucgcgGACGGGc -3'
miRNA:   3'- caccucUGCGGC-CGCCAGUG-------------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 155169 0.66 0.84226
Target:  5'- -cGGAacaGCUGGCGGcCGCGGCugccGGGg -3'
miRNA:   3'- caCCUcugCGGCCGCCaGUGCUG----CCC- -5'
14108 5' -60.5 NC_003521.1 + 164442 0.66 0.84226
Target:  5'- gGUGGAgGGCGCC-GCGGgccugagCAUGAaGGGc -3'
miRNA:   3'- -CACCU-CUGCGGcCGCCa------GUGCUgCCC- -5'
14108 5' -60.5 NC_003521.1 + 41634 0.66 0.84226
Target:  5'- cUGGGGcgugGCGCCcGUGGUCAUGAUGa- -3'
miRNA:   3'- cACCUC----UGCGGcCGCCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 210338 0.66 0.84226
Target:  5'- cUGGAaACuGCUGGUGGUgACGGaGGGg -3'
miRNA:   3'- cACCUcUG-CGGCCGCCAgUGCUgCCC- -5'
14108 5' -60.5 NC_003521.1 + 216298 0.66 0.84226
Target:  5'- -cGGAcGACGuuGGCGGgggugAUGuCGGGa -3'
miRNA:   3'- caCCU-CUGCggCCGCCag---UGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 17601 0.66 0.84226
Target:  5'- cUGGAcGCGCCaGGC-GUCGCGGCGu- -3'
miRNA:   3'- cACCUcUGCGG-CCGcCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 117487 0.66 0.841508
Target:  5'- -cGGcGACGggccuguCCGGCGGggcgUACGGCGGu -3'
miRNA:   3'- caCCuCUGC-------GGCCGCCa---GUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 167159 0.66 0.839999
Target:  5'- ---uGGGCGCCucgggcgucuuggaGGCGGcCGCGGCGGa -3'
miRNA:   3'- caccUCUGCGG--------------CCGCCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 163231 0.66 0.834668
Target:  5'- -cGGuGACGUgGGUucGGcCACGGCGGu -3'
miRNA:   3'- caCCuCUGCGgCCG--CCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 27345 0.66 0.834668
Target:  5'- uGUGGAuGGCGugcaCCGGCGccGUCAUGACGu- -3'
miRNA:   3'- -CACCU-CUGC----GGCCGC--CAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 212611 0.66 0.834668
Target:  5'- -aGGGGAaGCUgGGCGGUUGCGAuaccuUGGGc -3'
miRNA:   3'- caCCUCUgCGG-CCGCCAGUGCU-----GCCC- -5'
14108 5' -60.5 NC_003521.1 + 98399 0.66 0.834668
Target:  5'- cUGGugccGACGCUGGUGGUgACGuuGGc -3'
miRNA:   3'- cACCu---CUGCGGCCGCCAgUGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 39578 0.66 0.834668
Target:  5'- -cGGAGuccugccgGCGUCGGCGGUCcugcccugggugGCGGCGu- -3'
miRNA:   3'- caCCUC--------UGCGGCCGCCAG------------UGCUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.