miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 164442 0.66 0.84226
Target:  5'- gGUGGAgGGCGCC-GCGGgccugagCAUGAaGGGc -3'
miRNA:   3'- -CACCU-CUGCGGcCGCCa------GUGCUgCCC- -5'
14108 5' -60.5 NC_003521.1 + 155169 0.66 0.84226
Target:  5'- -cGGAacaGCUGGCGGcCGCGGCugccGGGg -3'
miRNA:   3'- caCCUcugCGGCCGCCaGUGCUG----CCC- -5'
14108 5' -60.5 NC_003521.1 + 91188 0.66 0.832359
Target:  5'- -aGGAGAgcaccuCGCCGGCGGcguccagcgccguuUCGCGcAUGaGGg -3'
miRNA:   3'- caCCUCU------GCGGCCGCC--------------AGUGC-UGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 74228 0.66 0.856946
Target:  5'- -aGGccgucGGCGCCGuGaCGGUgGaCGACGGGu -3'
miRNA:   3'- caCCu----CUGCGGC-C-GCCAgU-GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 27345 0.66 0.834668
Target:  5'- uGUGGAuGGCGugcaCCGGCGccGUCAUGACGu- -3'
miRNA:   3'- -CACCU-CUGC----GGCCGC--CAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 193177 0.66 0.86403
Target:  5'- -aGGA---GCCGGCGGgaGCGGCGGa -3'
miRNA:   3'- caCCUcugCGGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 192313 0.66 0.86403
Target:  5'- -cGGuagcGGCGUCGGCGG-CACcGugGGu -3'
miRNA:   3'- caCCu---CUGCGGCCGCCaGUG-CugCCc -5'
14108 5' -60.5 NC_003521.1 + 136883 0.66 0.870935
Target:  5'- -gGGuGGCGCCGGUGuUCGCGGuCGa- -3'
miRNA:   3'- caCCuCUGCGGCCGCcAGUGCU-GCcc -5'
14108 5' -60.5 NC_003521.1 + 92014 0.66 0.870935
Target:  5'- -gGcGAGGCG-CGGCGGcgGCGGCGGu -3'
miRNA:   3'- caC-CUCUGCgGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 238684 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 187487 0.66 0.86403
Target:  5'- -----cGCGCCGGCgugguGGUCACGACGa- -3'
miRNA:   3'- caccucUGCGGCCG-----CCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 36947 0.66 0.86403
Target:  5'- aUGGGcccGACGCUGGUcGUCGCaGCGGa -3'
miRNA:   3'- cACCU---CUGCGGCCGcCAGUGcUGCCc -5'
14108 5' -60.5 NC_003521.1 + 161494 0.66 0.849688
Target:  5'- -cGcGAGACcCUGGUgGGUCGCGugGuGGg -3'
miRNA:   3'- caC-CUCUGcGGCCG-CCAGUGCugC-CC- -5'
14108 5' -60.5 NC_003521.1 + 167159 0.66 0.839999
Target:  5'- ---uGGGCGCCucgggcgucuuggaGGCGGcCGCGGCGGa -3'
miRNA:   3'- caccUCUGCGG--------------CCGCCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 214567 0.66 0.8339
Target:  5'- cUGGGGugcagcaGCGCUGGCGuuccgugCGCGACGaGGg -3'
miRNA:   3'- cACCUC-------UGCGGCCGCca-----GUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 163231 0.66 0.834668
Target:  5'- -cGGuGACGUgGGUucGGcCACGGCGGu -3'
miRNA:   3'- caCCuCUGCGgCCG--CCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 212611 0.66 0.834668
Target:  5'- -aGGGGAaGCUgGGCGGUUGCGAuaccuUGGGc -3'
miRNA:   3'- caCCUCUgCGG-CCGCCAGUGCU-----GCCC- -5'
14108 5' -60.5 NC_003521.1 + 86339 0.66 0.852612
Target:  5'- cUGGAGgucuugccgGCGCCGGCGGUgccggugaccaacaGCGuGCGGa -3'
miRNA:   3'- cACCUC---------UGCGGCCGCCAg-------------UGC-UGCCc -5'
14108 5' -60.5 NC_003521.1 + 52824 0.66 0.870935
Target:  5'- -aGGAGACGgCGGUGGagaucgacagcaUCgACGACuGGu -3'
miRNA:   3'- caCCUCUGCgGCCGCC------------AG-UGCUGcCC- -5'
14108 5' -60.5 NC_003521.1 + 170885 0.66 0.870935
Target:  5'- gGUGGucAGGCGuCCGGCG-UCGCGAagcaGGc -3'
miRNA:   3'- -CACC--UCUGC-GGCCGCcAGUGCUg---CCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.