miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 163735 0.75 0.368051
Target:  5'- -gGGAugagcGGCGCCGGCGGcaacagcggcgcUCACGGCGGcGg -3'
miRNA:   3'- caCCU-----CUGCGGCCGCC------------AGUGCUGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 174031 0.74 0.406723
Target:  5'- -aGGAGACGgCGGUGGcccgCACGugGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCa---GUGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 100701 0.74 0.406723
Target:  5'- -cGGAGGCGCCGccGCGGcCGCugauggaggaGGCGGGg -3'
miRNA:   3'- caCCUCUGCGGC--CGCCaGUG----------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 64749 0.74 0.414759
Target:  5'- cGUGGccaAGACGCCGGcCGG-CGCGGCaccGGGc -3'
miRNA:   3'- -CACC---UCUGCGGCC-GCCaGUGCUG---CCC- -5'
14108 5' -60.5 NC_003521.1 + 148436 0.74 0.414759
Target:  5'- -cGGAGGaGCCGGCGGa-GCGACGGc -3'
miRNA:   3'- caCCUCUgCGGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 43440 0.74 0.42289
Target:  5'- -aGGAGGCGgCGGCGGcccuggaacucUCACaGCGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCC-----------AGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 166847 0.74 0.431117
Target:  5'- -aGGAuACGCaGGCGGUggCGCGGCGGGc -3'
miRNA:   3'- caCCUcUGCGgCCGCCA--GUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 197855 0.74 0.431117
Target:  5'- -cGGuGGGCGCCGGCgGGUCGCGcucGCuGGGc -3'
miRNA:   3'- caCC-UCUGCGGCCG-CCAGUGC---UG-CCC- -5'
14108 5' -60.5 NC_003521.1 + 10488 0.74 0.439437
Target:  5'- -cGGAGcauGCGCCGGCGGggAUGGCGuGGc -3'
miRNA:   3'- caCCUC---UGCGGCCGCCagUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 126310 0.73 0.4736
Target:  5'- cGUGGcGGCGgugggcaCGGCGGcCACGACGGa -3'
miRNA:   3'- -CACCuCUGCg------GCCGCCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 187587 0.73 0.4736
Target:  5'- -cGGGGGCuucGCCGGCGGUCGCuucgcccGCGGa -3'
miRNA:   3'- caCCUCUG---CGGCCGCCAGUGc------UGCCc -5'
14108 5' -60.5 NC_003521.1 + 98890 0.73 0.482349
Target:  5'- -aGGGGGCGCCGuC-GUCGCGGCGGa -3'
miRNA:   3'- caCCUCUGCGGCcGcCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 157037 0.73 0.482349
Target:  5'- -cGGGGGCG-CGGuCGGaggagCGCGGCGGGg -3'
miRNA:   3'- caCCUCUGCgGCC-GCCa----GUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 123447 0.73 0.491175
Target:  5'- -cGGAGGCGCCGuaGCGGggACcGCGGGu -3'
miRNA:   3'- caCCUCUGCGGC--CGCCagUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 143065 0.73 0.491176
Target:  5'- gGUGGuGGCGCCGGUGGcgaUACGuCGGa -3'
miRNA:   3'- -CACCuCUGCGGCCGCCa--GUGCuGCCc -5'
14108 5' -60.5 NC_003521.1 + 126280 0.72 0.509047
Target:  5'- cGUGGugcuGAUGUCGcGCuccuccuuGGUCACGAUGGGg -3'
miRNA:   3'- -CACCu---CUGCGGC-CG--------CCAGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 77712 0.72 0.509047
Target:  5'- -aGGAGGCGgCGGUGGUCGUGGCGcuGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCAGUGCUGC--CC- -5'
14108 5' -60.5 NC_003521.1 + 102369 0.72 0.518085
Target:  5'- uGUGGcGcCGCCGGCGaugCACGcGCGGGg -3'
miRNA:   3'- -CACCuCuGCGGCCGCca-GUGC-UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 86205 0.72 0.518085
Target:  5'- gGUGGAGGCGaagggCGGCGG-CACGcCGGcGg -3'
miRNA:   3'- -CACCUCUGCg----GCCGCCaGUGCuGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 183440 0.72 0.518085
Target:  5'- uGUGGcgcgagaucGACGCCcuGGCGcGUCACGGCGGcGg -3'
miRNA:   3'- -CACCu--------CUGCGG--CCGC-CAGUGCUGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.