Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14108 | 5' | -60.5 | NC_003521.1 | + | 125705 | 1.1 | 0.001939 |
Target: 5'- aGUGGAGACGCCGGCGGUCACGACGGGg -3' miRNA: 3'- -CACCUCUGCGGCCGCCAGUGCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 98466 | 0.82 | 0.154566 |
Target: 5'- -aGGAGGCGgCGGCGGcCGCGGCGGc -3' miRNA: 3'- caCCUCUGCgGCCGCCaGUGCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 137475 | 0.81 | 0.162045 |
Target: 5'- aGUGGAagGGCGCCGGCGuGUCGCGGCGc- -3' miRNA: 3'- -CACCU--CUGCGGCCGC-CAGUGCUGCcc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 186777 | 0.8 | 0.19084 |
Target: 5'- -cGGAGGCGgCGGUGGUgGCGGCGGcGg -3' miRNA: 3'- caCCUCUGCgGCCGCCAgUGCUGCC-C- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 129284 | 0.8 | 0.198938 |
Target: 5'- gGUaGAGGCGCCGGCGGUacuuuuugagcgGCGGCGGGa -3' miRNA: 3'- -CAcCUCUGCGGCCGCCAg-----------UGCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 29965 | 0.79 | 0.214076 |
Target: 5'- cUGGGcccuACGCCGGUGGUCugGACGGa -3' miRNA: 3'- cACCUc---UGCGGCCGCCAGugCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 172315 | 0.79 | 0.214076 |
Target: 5'- -cGGuGGCGCCaGGcCGGUCGCGGCGGa -3' miRNA: 3'- caCCuCUGCGG-CC-GCCAGUGCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 98241 | 0.79 | 0.229154 |
Target: 5'- -gGGAGGCGggGGCGGcCACGGCGGGc -3' miRNA: 3'- caCCUCUGCggCCGCCaGUGCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 197186 | 0.78 | 0.245121 |
Target: 5'- cUGGAGGCGgUGGCGGUCccaGCG-CGGGa -3' miRNA: 3'- cACCUCUGCgGCCGCCAG---UGCuGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 172396 | 0.78 | 0.250645 |
Target: 5'- uUGaGGGGCGCCGGCGGagccgUCGCcGCGGGa -3' miRNA: 3'- cAC-CUCUGCGGCCGCC-----AGUGcUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 224019 | 0.77 | 0.279812 |
Target: 5'- -cGGcGGGC-CCGGCGGUCGgGGCGGGc -3' miRNA: 3'- caCC-UCUGcGGCCGCCAGUgCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 238449 | 0.77 | 0.292214 |
Target: 5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3' miRNA: 3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 38221 | 0.77 | 0.292214 |
Target: 5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3' miRNA: 3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 179052 | 0.76 | 0.338982 |
Target: 5'- -cGGAGcCGgCGGCGGUCccggUGACGGGg -3' miRNA: 3'- caCCUCuGCgGCCGCCAGu---GCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 101741 | 0.76 | 0.34609 |
Target: 5'- aUGGGGAagGCCGGCaGGUCguGCGGCGGa -3' miRNA: 3'- cACCUCUg-CGGCCG-CCAG--UGCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 186921 | 0.76 | 0.34609 |
Target: 5'- -gGGGGGCGCCGGUGGcggggGCGGCGGc -3' miRNA: 3'- caCCUCUGCGGCCGCCag---UGCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 39888 | 0.75 | 0.360625 |
Target: 5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3' miRNA: 3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 17490 | 0.75 | 0.360625 |
Target: 5'- -cGGuagcGGCGCCGcCGGUCACGGCGGu -3' miRNA: 3'- caCCu---CUGCGGCcGCCAGUGCUGCCc -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 240115 | 0.75 | 0.360625 |
Target: 5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3' miRNA: 3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5' |
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14108 | 5' | -60.5 | NC_003521.1 | + | 163735 | 0.75 | 0.368051 |
Target: 5'- -gGGAugagcGGCGCCGGCGGcaacagcggcgcUCACGGCGGcGg -3' miRNA: 3'- caCCU-----CUGCGGCCGCC------------AGUGCUGCC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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