miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 100501 0.72 0.554826
Target:  5'- gGUGGcaccgcGGGCGUCGGaCGGUgCACGgugGCGGGa -3'
miRNA:   3'- -CACC------UCUGCGGCC-GCCA-GUGC---UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 43440 0.74 0.42289
Target:  5'- -aGGAGGCGgCGGCGGcccuggaacucUCACaGCGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCC-----------AGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 166847 0.74 0.431117
Target:  5'- -aGGAuACGCaGGCGGUggCGCGGCGGGc -3'
miRNA:   3'- caCCUcUGCGgCCGCCA--GUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 10488 0.74 0.439437
Target:  5'- -cGGAGcauGCGCCGGCGGggAUGGCGuGGc -3'
miRNA:   3'- caCCUC---UGCGGCCGCCagUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 187587 0.73 0.4736
Target:  5'- -cGGGGGCuucGCCGGCGGUCGCuucgcccGCGGa -3'
miRNA:   3'- caCCUCUG---CGGCCGCCAGUGc------UGCCc -5'
14108 5' -60.5 NC_003521.1 + 98890 0.73 0.482349
Target:  5'- -aGGGGGCGCCGuC-GUCGCGGCGGa -3'
miRNA:   3'- caCCUCUGCGGCcGcCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 143065 0.73 0.491176
Target:  5'- gGUGGuGGCGCCGGUGGcgaUACGuCGGa -3'
miRNA:   3'- -CACCuCUGCGGCCGCCa--GUGCuGCCc -5'
14108 5' -60.5 NC_003521.1 + 126280 0.72 0.509047
Target:  5'- cGUGGugcuGAUGUCGcGCuccuccuuGGUCACGAUGGGg -3'
miRNA:   3'- -CACCu---CUGCGGC-CG--------CCAGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 86205 0.72 0.518085
Target:  5'- gGUGGAGGCGaagggCGGCGG-CACGcCGGcGg -3'
miRNA:   3'- -CACCUCUGCg----GCCGCCaGUGCuGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 64749 0.74 0.414759
Target:  5'- cGUGGccaAGACGCCGGcCGG-CGCGGCaccGGGc -3'
miRNA:   3'- -CACC---UCUGCGGCC-GCCaGUGCUG---CCC- -5'
14108 5' -60.5 NC_003521.1 + 100701 0.74 0.406723
Target:  5'- -cGGAGGCGCCGccGCGGcCGCugauggaggaGGCGGGg -3'
miRNA:   3'- caCCUCUGCGGC--CGCCaGUG----------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 174031 0.74 0.406723
Target:  5'- -aGGAGACGgCGGUGGcccgCACGugGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCa---GUGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 197186 0.78 0.245121
Target:  5'- cUGGAGGCGgUGGCGGUCccaGCG-CGGGa -3'
miRNA:   3'- cACCUCUGCgGCCGCCAG---UGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 224019 0.77 0.279812
Target:  5'- -cGGcGGGC-CCGGCGGUCGgGGCGGGc -3'
miRNA:   3'- caCC-UCUGcGGCCGCCAGUgCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 238449 0.77 0.292214
Target:  5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3'
miRNA:   3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 101741 0.76 0.34609
Target:  5'- aUGGGGAagGCCGGCaGGUCguGCGGCGGa -3'
miRNA:   3'- cACCUCUg-CGGCCG-CCAG--UGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 240115 0.75 0.360625
Target:  5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3'
miRNA:   3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 17490 0.75 0.360625
Target:  5'- -cGGuagcGGCGCCGcCGGUCACGGCGGu -3'
miRNA:   3'- caCCu---CUGCGGCcGCCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 218710 0.75 0.368051
Target:  5'- -aGGAGACGgCGGCGG---CGGCGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCaguGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 163735 0.75 0.368051
Target:  5'- -gGGAugagcGGCGCCGGCGGcaacagcggcgcUCACGGCGGcGg -3'
miRNA:   3'- caCCU-----CUGCGGCCGCC------------AGUGCUGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.