miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 125705 1.1 0.001939
Target:  5'- aGUGGAGACGCCGGCGGUCACGACGGGg -3'
miRNA:   3'- -CACCUCUGCGGCCGCCAGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 77712 0.72 0.509047
Target:  5'- -aGGAGGCGgCGGUGGUCGUGGCGcuGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCAGUGCUGC--CC- -5'
14108 5' -60.5 NC_003521.1 + 183440 0.72 0.518085
Target:  5'- uGUGGcgcgagaucGACGCCcuGGCGcGUCACGGCGGcGg -3'
miRNA:   3'- -CACCu--------CUGCGG--CCGC-CAGUGCUGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 103648 0.66 0.870935
Target:  5'- -cGGGGGCagcucggcggcgGCCGcugcggccGCGGcCAUGGCGGGc -3'
miRNA:   3'- caCCUCUG------------CGGC--------CGCCaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 29965 0.79 0.214076
Target:  5'- cUGGGcccuACGCCGGUGGUCugGACGGa -3'
miRNA:   3'- cACCUc---UGCGGCCGCCAGugCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 172315 0.79 0.214076
Target:  5'- -cGGuGGCGCCaGGcCGGUCGCGGCGGa -3'
miRNA:   3'- caCCuCUGCGG-CC-GCCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 172396 0.78 0.250645
Target:  5'- uUGaGGGGCGCCGGCGGagccgUCGCcGCGGGa -3'
miRNA:   3'- cAC-CUCUGCGGCCGCC-----AGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 38221 0.77 0.292214
Target:  5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3'
miRNA:   3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 39888 0.75 0.360625
Target:  5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3'
miRNA:   3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 123447 0.73 0.491175
Target:  5'- -cGGAGGCGCCGuaGCGGggACcGCGGGu -3'
miRNA:   3'- caCCUCUGCGGC--CGCCagUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 197855 0.74 0.431117
Target:  5'- -cGGuGGGCGCCGGCgGGUCGCGcucGCuGGGc -3'
miRNA:   3'- caCC-UCUGCGGCCG-CCAGUGC---UG-CCC- -5'
14108 5' -60.5 NC_003521.1 + 186921 0.76 0.34609
Target:  5'- -gGGGGGCGCCGGUGGcggggGCGGCGGc -3'
miRNA:   3'- caCCUCUGCGGCCGCCag---UGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 98466 0.82 0.154566
Target:  5'- -aGGAGGCGgCGGCGGcCGCGGCGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 126310 0.73 0.4736
Target:  5'- cGUGGcGGCGgugggcaCGGCGGcCACGACGGa -3'
miRNA:   3'- -CACCuCUGCg------GCCGCCaGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 186777 0.8 0.19084
Target:  5'- -cGGAGGCGgCGGUGGUgGCGGCGGcGg -3'
miRNA:   3'- caCCUCUGCgGCCGCCAgUGCUGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 179052 0.76 0.338982
Target:  5'- -cGGAGcCGgCGGCGGUCccggUGACGGGg -3'
miRNA:   3'- caCCUCuGCgGCCGCCAGu---GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 157037 0.73 0.482349
Target:  5'- -cGGGGGCG-CGGuCGGaggagCGCGGCGGGg -3'
miRNA:   3'- caCCUCUGCgGCC-GCCa----GUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 102369 0.72 0.518085
Target:  5'- uGUGGcGcCGCCGGCGaugCACGcGCGGGg -3'
miRNA:   3'- -CACCuCuGCGGCCGCca-GUGC-UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 129284 0.8 0.198938
Target:  5'- gGUaGAGGCGCCGGCGGUacuuuuugagcgGCGGCGGGa -3'
miRNA:   3'- -CAcCUCUGCGGCCGCCAg-----------UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 98241 0.79 0.229154
Target:  5'- -gGGAGGCGggGGCGGcCACGGCGGGc -3'
miRNA:   3'- caCCUCUGCggCCGCCaGUGCUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.