miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 103648 0.66 0.870935
Target:  5'- -cGGGGGCagcucggcggcgGCCGcugcggccGCGGcCAUGGCGGGc -3'
miRNA:   3'- caCCUCUG------------CGGC--------CGCCaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 91188 0.66 0.832359
Target:  5'- -aGGAGAgcaccuCGCCGGCGGcguccagcgccguuUCGCGcAUGaGGg -3'
miRNA:   3'- caCCUCU------GCGGCCGCC--------------AGUGC-UGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 214567 0.66 0.8339
Target:  5'- cUGGGGugcagcaGCGCUGGCGuuccgugCGCGACGaGGg -3'
miRNA:   3'- cACCUC-------UGCGGCCGCca-----GUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 145035 0.66 0.849688
Target:  5'- cUGGAucgcGugGCCGaGCGG-CACGAUGa- -3'
miRNA:   3'- cACCU----CugCGGC-CGCCaGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 17601 0.66 0.84226
Target:  5'- cUGGAcGCGCCaGGC-GUCGCGGCGu- -3'
miRNA:   3'- cACCUcUGCGG-CCGcCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 63872 0.66 0.86403
Target:  5'- -cGGuGGACGa-GGCGG-CGCGcCGGGa -3'
miRNA:   3'- caCC-UCUGCggCCGCCaGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 47030 0.66 0.856946
Target:  5'- aUGG-GGCGCUGGUaGUCGCGcAUGGu -3'
miRNA:   3'- cACCuCUGCGGCCGcCAGUGC-UGCCc -5'
14108 5' -60.5 NC_003521.1 + 92014 0.66 0.870935
Target:  5'- -gGcGAGGCG-CGGCGGcgGCGGCGGu -3'
miRNA:   3'- caC-CUCUGCgGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 39578 0.66 0.834668
Target:  5'- -cGGAGuccugccgGCGUCGGCGGUCcugcccugggugGCGGCGu- -3'
miRNA:   3'- caCCUC--------UGCGGCCGCCAG------------UGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 57408 0.66 0.848953
Target:  5'- -----aGCGCCGuGCGGUCGCccaccgucucgcgGACGGGc -3'
miRNA:   3'- caccucUGCGGC-CGCCAGUG-------------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 238684 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 131074 0.66 0.849688
Target:  5'- nGUGGcGGCGaCC-GCGGcUCGCG-CGGGc -3'
miRNA:   3'- -CACCuCUGC-GGcCGCC-AGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 170513 0.66 0.86403
Target:  5'- -gGGAGACaugaCGGCGuGUgACGgggACGGGg -3'
miRNA:   3'- caCCUCUGcg--GCCGC-CAgUGC---UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 192313 0.66 0.86403
Target:  5'- -cGGuagcGGCGUCGGCGG-CACcGugGGu -3'
miRNA:   3'- caCCu---CUGCGGCCGCCaGUG-CugCCc -5'
14108 5' -60.5 NC_003521.1 + 41634 0.66 0.84226
Target:  5'- cUGGGGcgugGCGCCcGUGGUCAUGAUGa- -3'
miRNA:   3'- cACCUC----UGCGGcCGCCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 155641 0.66 0.849688
Target:  5'- gGUGGuAGcagaaGCGCCGuGCugGGUgGCGGCGGa -3'
miRNA:   3'- -CACC-UC-----UGCGGC-CG--CCAgUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 129874 0.66 0.86403
Target:  5'- aGUGGGuGACgGCCGGggaggaggaGGaCgACGACGGGg -3'
miRNA:   3'- -CACCU-CUG-CGGCCg--------CCaG-UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 117487 0.66 0.841508
Target:  5'- -cGGcGACGggccuguCCGGCGGggcgUACGGCGGu -3'
miRNA:   3'- caCCuCUGC-------GGCCGCCa---GUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 216298 0.66 0.84226
Target:  5'- -cGGAcGACGuuGGCGGgggugAUGuCGGGa -3'
miRNA:   3'- caCCU-CUGCggCCGCCag---UGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 187487 0.66 0.86403
Target:  5'- -----cGCGCCGGCgugguGGUCACGACGa- -3'
miRNA:   3'- caccucUGCGGCCG-----CCAGUGCUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.