miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 975 0.71 0.573489
Target:  5'- --cGAGAgGCCGGCGGUCugcuccCGugGGc -3'
miRNA:   3'- cacCUCUgCGGCCGCCAGu-----GCugCCc -5'
14108 5' -60.5 NC_003521.1 + 6386 0.7 0.658591
Target:  5'- -cGGAGggGCGCCGcagcuaccGCGGcgGCGACGGGu -3'
miRNA:   3'- caCCUC--UGCGGC--------CGCCagUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 7729 0.7 0.658591
Target:  5'- gGUGGGGagggcgGCGCgagCGGCGGagGCGGCGGc -3'
miRNA:   3'- -CACCUC------UGCG---GCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 10488 0.74 0.439437
Target:  5'- -cGGAGcauGCGCCGGCGGggAUGGCGuGGc -3'
miRNA:   3'- caCCUC---UGCGGCCGCCagUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 12549 0.7 0.649123
Target:  5'- cGUGGAgGACGCCGaGCG-UCugGAgaugccCGGGc -3'
miRNA:   3'- -CACCU-CUGCGGC-CGCcAGugCU------GCCC- -5'
14108 5' -60.5 NC_003521.1 + 13468 0.68 0.751112
Target:  5'- -cGGuaGCGCCGucgaCGGUCuggGCGACGGGg -3'
miRNA:   3'- caCCucUGCGGCc---GCCAG---UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 16996 0.71 0.6112
Target:  5'- -gGGAcagcaGGCGCCcGCGGUgGCGGCGGc -3'
miRNA:   3'- caCCU-----CUGCGGcCGCCAgUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 17490 0.75 0.360625
Target:  5'- -cGGuagcGGCGCCGcCGGUCACGGCGGu -3'
miRNA:   3'- caCCu---CUGCGGCcGCCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 17601 0.66 0.84226
Target:  5'- cUGGAcGCGCCaGGC-GUCGCGGCGu- -3'
miRNA:   3'- cACCUcUGCGG-CCGcCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 17757 0.67 0.819015
Target:  5'- -cGGGGAacuggccguacCGCCGGCGG-CG-GACGGu -3'
miRNA:   3'- caCCUCU-----------GCGGCCGCCaGUgCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 18253 0.69 0.696211
Target:  5'- -cGG-GACGagCGGUGGUggggaccugccCGCGACGGGa -3'
miRNA:   3'- caCCuCUGCg-GCCGCCA-----------GUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 18728 0.67 0.819015
Target:  5'- --cGAGACgcuGCCGGCGcugCAgGGCGGGc -3'
miRNA:   3'- cacCUCUG---CGGCCGCca-GUgCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 21950 0.67 0.810967
Target:  5'- cUGGAG-CaGUgGGCGaG-CGCGGCGGGa -3'
miRNA:   3'- cACCUCuG-CGgCCGC-CaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 27345 0.66 0.834668
Target:  5'- uGUGGAuGGCGugcaCCGGCGccGUCAUGACGu- -3'
miRNA:   3'- -CACCU-CUGC----GGCCGC--CAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 29965 0.79 0.214076
Target:  5'- cUGGGcccuACGCCGGUGGUCugGACGGa -3'
miRNA:   3'- cACCUc---UGCGGCCGCCAGugCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 36947 0.66 0.86403
Target:  5'- aUGGGcccGACGCUGGUcGUCGCaGCGGa -3'
miRNA:   3'- cACCU---CUGCGGCCGcCAGUGcUGCCc -5'
14108 5' -60.5 NC_003521.1 + 37537 0.72 0.527186
Target:  5'- -gGGGGugGgcagCGGgGGUCGCGGCGGa -3'
miRNA:   3'- caCCUCugCg---GCCgCCAGUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 38221 0.77 0.292214
Target:  5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3'
miRNA:   3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 38457 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 39578 0.66 0.834668
Target:  5'- -cGGAGuccugccgGCGUCGGCGGUCcugcccugggugGCGGCGu- -3'
miRNA:   3'- caCCUC--------UGCGGCCGCCAG------------UGCUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.