miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 39807 0.68 0.759991
Target:  5'- -gGcGGGGCGCCgGGCGGUCcuccgcCGAUGGc -3'
miRNA:   3'- caC-CUCUGCGG-CCGCCAGu-----GCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 39888 0.75 0.360625
Target:  5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3'
miRNA:   3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 41634 0.66 0.84226
Target:  5'- cUGGGGcgugGCGCCcGUGGUCAUGAUGa- -3'
miRNA:   3'- cACCUC----UGCGGcCGCCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 43440 0.74 0.42289
Target:  5'- -aGGAGGCGgCGGCGGcccuggaacucUCACaGCGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCC-----------AGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 43547 0.68 0.733093
Target:  5'- -cGaGAGACGCCgcgacagaGGCGGcCGCugacugggggGACGGGg -3'
miRNA:   3'- caC-CUCUGCGG--------CCGCCaGUG----------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 46402 0.68 0.733093
Target:  5'- cGUGGGGcGCGCgGGCcaGGaagCgGCGACGGGc -3'
miRNA:   3'- -CACCUC-UGCGgCCG--CCa--G-UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 46811 0.67 0.819015
Target:  5'- cUGGAuGACGCCGccgcCGGUgACGACGc- -3'
miRNA:   3'- cACCU-CUGCGGCc---GCCAgUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 47030 0.66 0.856946
Target:  5'- aUGG-GGCGCUGGUaGUCGCGcAUGGu -3'
miRNA:   3'- cACCuCUGCGGCCGcCAGUGC-UGCCc -5'
14108 5' -60.5 NC_003521.1 + 48556 0.72 0.527186
Target:  5'- cGUGGAGACGCCGcUGGUgAaggUGACGGc -3'
miRNA:   3'- -CACCUCUGCGGCcGCCAgU---GCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 48727 0.7 0.658591
Target:  5'- gGUGGAGACGCCGGCGa-CGCuGCa-- -3'
miRNA:   3'- -CACCUCUGCGGCCGCcaGUGcUGccc -5'
14108 5' -60.5 NC_003521.1 + 50770 0.69 0.686857
Target:  5'- cGUGaAGAcCGCgCGGCGGUCcuggucgaucgGCGACGGu -3'
miRNA:   3'- -CACcUCU-GCG-GCCGCCAG-----------UGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 52564 0.68 0.742144
Target:  5'- -cGcAGACGCCGGCagaagacGUCGCG-CGGGc -3'
miRNA:   3'- caCcUCUGCGGCCGc------CAGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 52824 0.66 0.870935
Target:  5'- -aGGAGACGgCGGUGGagaucgacagcaUCgACGACuGGu -3'
miRNA:   3'- caCCUCUGCgGCCGCC------------AG-UGCUGcCC- -5'
14108 5' -60.5 NC_003521.1 + 53164 0.67 0.810967
Target:  5'- -cGGGGACGgCGGCgaggaGGUCGgCGACGc- -3'
miRNA:   3'- caCCUCUGCgGCCG-----CCAGU-GCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 57408 0.66 0.848953
Target:  5'- -----aGCGCCGuGCGGUCGCccaccgucucgcgGACGGGc -3'
miRNA:   3'- caccucUGCGGC-CGCCAGUG-------------CUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 60737 0.67 0.826134
Target:  5'- uUGGGcaagaacGGCGgCGGCaGUCGCcGCGGGa -3'
miRNA:   3'- cACCU-------CUGCgGCCGcCAGUGcUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 63000 0.71 0.592295
Target:  5'- aUGGAGGCaagaagaaGCCGGCGGcgccCACGACGc- -3'
miRNA:   3'- cACCUCUG--------CGGCCGCCa---GUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 63872 0.66 0.86403
Target:  5'- -cGGuGGACGa-GGCGG-CGCGcCGGGa -3'
miRNA:   3'- caCC-UCUGCggCCGCCaGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 64749 0.74 0.414759
Target:  5'- cGUGGccaAGACGCCGGcCGG-CGCGGCaccGGGc -3'
miRNA:   3'- -CACC---UCUGCGGCC-GCCaGUGCUG---CCC- -5'
14108 5' -60.5 NC_003521.1 + 69748 0.71 0.591352
Target:  5'- -gGGAGGCGgCGGUGG-CACaagugcaugaucgGACGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCaGUG-------------CUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.