miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 240115 0.75 0.360625
Target:  5'- uUGGGGugGgCGuGCGGUCGuccCGGCGGGc -3'
miRNA:   3'- cACCUCugCgGC-CGCCAGU---GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 240034 0.68 0.759991
Target:  5'- -gGcGGGGCGCCgGGCGGUCcuccgcCGAUGGc -3'
miRNA:   3'- caC-CUCUGCGG-CCGCCAGu-----GCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 238684 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 238449 0.77 0.292214
Target:  5'- -aGGAGGCGCagGGCGGcCuCGGCGGGc -3'
miRNA:   3'- caCCUCUGCGg-CCGCCaGuGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 236146 0.69 0.686857
Target:  5'- -gGGGGAccgcgcgacguCGCCGGCGGgaccuagcggACGAUGGGu -3'
miRNA:   3'- caCCUCU-----------GCGGCCGCCag--------UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 227606 0.67 0.810967
Target:  5'- -aGGcuuGGGCGCCGGuCGGcccuccaaCACGGCGGc -3'
miRNA:   3'- caCC---UCUGCGGCC-GCCa-------GUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 224728 0.69 0.723967
Target:  5'- cGUGGugcucgccGACGCaGGCGGccagCGCGuCGGGg -3'
miRNA:   3'- -CACCu-------CUGCGgCCGCCa---GUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 224019 0.77 0.279812
Target:  5'- -cGGcGGGC-CCGGCGGUCGgGGCGGGc -3'
miRNA:   3'- caCC-UCUGcGGCCGCCAGUgCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 223927 0.7 0.66804
Target:  5'- uUGGAGGCGCggccgaGGgGGUCgagGCGgccGCGGGg -3'
miRNA:   3'- cACCUCUGCGg-----CCgCCAG---UGC---UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 223465 0.7 0.66804
Target:  5'- cUGGGccgccGCGCCGGC-GUCACGGCccGGGa -3'
miRNA:   3'- cACCUc----UGCGGCCGcCAGUGCUG--CCC- -5'
14108 5' -60.5 NC_003521.1 + 218710 0.75 0.368051
Target:  5'- -aGGAGACGgCGGCGG---CGGCGGGc -3'
miRNA:   3'- caCCUCUGCgGCCGCCaguGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 217640 0.71 0.564137
Target:  5'- -cGGcGugGUCGGgGGgCAUGGCGGGa -3'
miRNA:   3'- caCCuCugCGGCCgCCaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 216298 0.66 0.84226
Target:  5'- -cGGAcGACGuuGGCGGgggugAUGuCGGGa -3'
miRNA:   3'- caCCU-CUGCggCCGCCag---UGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 215642 0.67 0.810967
Target:  5'- -cGG-GGCuCCGcaUGGUCGCGGCGGGa -3'
miRNA:   3'- caCCuCUGcGGCc-GCCAGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 214567 0.66 0.8339
Target:  5'- cUGGGGugcagcaGCGCUGGCGuuccgugCGCGACGaGGg -3'
miRNA:   3'- cACCUC-------UGCGGCCGCca-----GUGCUGC-CC- -5'
14108 5' -60.5 NC_003521.1 + 212611 0.66 0.834668
Target:  5'- -aGGGGAaGCUgGGCGGUUGCGAuaccuUGGGc -3'
miRNA:   3'- caCCUCUgCGG-CCGCCAGUGCU-----GCCC- -5'
14108 5' -60.5 NC_003521.1 + 210338 0.66 0.84226
Target:  5'- cUGGAaACuGCUGGUGGUgACGGaGGGg -3'
miRNA:   3'- cACCUcUG-CGGCCGCCAgUGCUgCCC- -5'
14108 5' -60.5 NC_003521.1 + 209510 0.67 0.783456
Target:  5'- cGUGGGGGgucacggugaccguCGCCGcugccGCGGUUAugcgccCGGCGGGg -3'
miRNA:   3'- -CACCUCU--------------GCGGC-----CGCCAGU------GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 204749 0.71 0.564137
Target:  5'- aUGGAGGCGCCGcCGccgcccuguuguGUCGgCGGCGGGc -3'
miRNA:   3'- cACCUCUGCGGCcGC------------CAGU-GCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 201202 0.69 0.723967
Target:  5'- --cGAGAgGCCGGCGGUCugcuccCGcUGGGc -3'
miRNA:   3'- cacCUCUgCGGCCGCCAGu-----GCuGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.