miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 3' -51.9 NC_003521.1 + 211418 0.66 0.997093
Target:  5'- -cCGggGCCcggacuguccucGUCGUcgUCCUCCUCg-- -3'
miRNA:   3'- uaGCaaCGG------------CAGCAa-AGGAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 119051 0.66 0.997093
Target:  5'- cGUCGgggUGCUGgagCGc-UCCUCCUCUu- -3'
miRNA:   3'- -UAGCa--ACGGCa--GCaaAGGAGGAGAuc -5'
14111 3' -51.9 NC_003521.1 + 212582 0.66 0.996586
Target:  5'- cUCGgcGCCGUC--UUCUUCCUCc-- -3'
miRNA:   3'- uAGCaaCGGCAGcaAAGGAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 183066 0.66 0.995355
Target:  5'- gAUCGUcGCCGUCGg-UCCUgUaCUGGg -3'
miRNA:   3'- -UAGCAaCGGCAGCaaAGGAgGaGAUC- -5'
14111 3' -51.9 NC_003521.1 + 47585 0.66 0.995355
Target:  5'- -aCGgugGCgGUCGgagUCCUCCUCc-- -3'
miRNA:   3'- uaGCaa-CGgCAGCaa-AGGAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 71137 0.66 0.995355
Target:  5'- cUCGUcGCCGcC---UCCUCCUCUGc -3'
miRNA:   3'- uAGCAaCGGCaGcaaAGGAGGAGAUc -5'
14111 3' -51.9 NC_003521.1 + 93330 0.67 0.990655
Target:  5'- uUCGggGCCGUg--UUCCUCaUCUGGg -3'
miRNA:   3'- uAGCaaCGGCAgcaAAGGAGgAGAUC- -5'
14111 3' -51.9 NC_003521.1 + 95853 0.68 0.98796
Target:  5'- cGUCGU--CCGUCcucUCCUCCUCUGu -3'
miRNA:   3'- -UAGCAacGGCAGcaaAGGAGGAGAUc -5'
14111 3' -51.9 NC_003521.1 + 25013 0.68 0.986405
Target:  5'- uAUCGcUGCCGUCcuUUUCCUCCggCUc- -3'
miRNA:   3'- -UAGCaACGGCAGc-AAAGGAGGa-GAuc -5'
14111 3' -51.9 NC_003521.1 + 44126 0.68 0.984699
Target:  5'- aGUCG--GCCGUCGcugcUCCUCCUCc-- -3'
miRNA:   3'- -UAGCaaCGGCAGCaa--AGGAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 223356 0.68 0.982836
Target:  5'- -cCGgUGCCGUCGUcucUCCUCCgagcgCUGc -3'
miRNA:   3'- uaGCaACGGCAGCAa--AGGAGGa----GAUc -5'
14111 3' -51.9 NC_003521.1 + 223772 0.68 0.979506
Target:  5'- uAUCGUcggcgcugcuggugcUGCCGUUGUcgUCgCUCCUCUu- -3'
miRNA:   3'- -UAGCA---------------ACGGCAGCAa-AG-GAGGAGAuc -5'
14111 3' -51.9 NC_003521.1 + 94166 0.68 0.978603
Target:  5'- uUCGUUGCCG-----UCCUCCUCg-- -3'
miRNA:   3'- uAGCAACGGCagcaaAGGAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 94345 0.69 0.976217
Target:  5'- aAUCGacGUCGUCG--UCCUCCUCgAGg -3'
miRNA:   3'- -UAGCaaCGGCAGCaaAGGAGGAGaUC- -5'
14111 3' -51.9 NC_003521.1 + 239508 0.69 0.976217
Target:  5'- cAUgGgaGCCGUCGUgucgcuaUCUUCCUCUGu -3'
miRNA:   3'- -UAgCaaCGGCAGCAa------AGGAGGAGAUc -5'
14111 3' -51.9 NC_003521.1 + 142510 0.69 0.973643
Target:  5'- cGUCGUgGCCGcCGccaccacUUCCUCCUCUu- -3'
miRNA:   3'- -UAGCAaCGGCaGCa------AAGGAGGAGAuc -5'
14111 3' -51.9 NC_003521.1 + 181826 0.69 0.964715
Target:  5'- -cCGUaGCCuucGUCGUcccCCUCCUCUAGc -3'
miRNA:   3'- uaGCAaCGG---CAGCAaa-GGAGGAGAUC- -5'
14111 3' -51.9 NC_003521.1 + 197218 0.7 0.957698
Target:  5'- cUCGUUGUCGUCGcgcucgUCgUCCUCg-- -3'
miRNA:   3'- uAGCAACGGCAGCaa----AGgAGGAGauc -5'
14111 3' -51.9 NC_003521.1 + 27729 0.72 0.889349
Target:  5'- cGUCGa-GCCG-CGUcUCCUCCUCUAu -3'
miRNA:   3'- -UAGCaaCGGCaGCAaAGGAGGAGAUc -5'
14111 3' -51.9 NC_003521.1 + 160336 0.76 0.716491
Target:  5'- uGUgGUUGUCGUCGUUaucgucgucgUCCUCCUCUu- -3'
miRNA:   3'- -UAgCAACGGCAGCAA----------AGGAGGAGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.