miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14113 5' -57 NC_003521.1 + 161500 0.66 0.940855
Target:  5'- aUCGUCGCGCUG-CUuGCUGCUcuUCc -3'
miRNA:   3'- aGGCAGUGCGGCuGGuCGACGAacAG- -5'
14113 5' -57 NC_003521.1 + 92371 0.66 0.940855
Target:  5'- cCCGUC-CGCUcGCCcGCUGCc-GUCg -3'
miRNA:   3'- aGGCAGuGCGGcUGGuCGACGaaCAG- -5'
14113 5' -57 NC_003521.1 + 112848 0.66 0.940855
Target:  5'- -gCGUCAUgGCCGAgcugccCCAGCUGCUc--- -3'
miRNA:   3'- agGCAGUG-CGGCU------GGUCGACGAacag -5'
14113 5' -57 NC_003521.1 + 212507 0.66 0.940855
Target:  5'- gUCCGcaggcCGCGCCGgggucgcuGCC-GCUGCUcucguUGUCg -3'
miRNA:   3'- -AGGCa----GUGCGGC--------UGGuCGACGA-----ACAG- -5'
14113 5' -57 NC_003521.1 + 169350 0.66 0.940855
Target:  5'- aCCaGUCGCGUCGgcgcGCCAGCaUGUaaGUCa -3'
miRNA:   3'- aGG-CAGUGCGGC----UGGUCG-ACGaaCAG- -5'
14113 5' -57 NC_003521.1 + 27236 0.66 0.940855
Target:  5'- cUgGUCAuCGCCGGCUGcuacguggcGCUGCUgucgGUCa -3'
miRNA:   3'- aGgCAGU-GCGGCUGGU---------CGACGAa---CAG- -5'
14113 5' -57 NC_003521.1 + 181272 0.66 0.940855
Target:  5'- uUUCGaUCACGgCGuCCAGCUGCa---- -3'
miRNA:   3'- -AGGC-AGUGCgGCuGGUCGACGaacag -5'
14113 5' -57 NC_003521.1 + 82743 0.66 0.939493
Target:  5'- gUCCGcuugcgggacgagaUCACGCgCGACCGGCggGCcgUGg- -3'
miRNA:   3'- -AGGC--------------AGUGCG-GCUGGUCGa-CGa-ACag -5'
14113 5' -57 NC_003521.1 + 164329 0.66 0.936239
Target:  5'- cCCGcUCugGCCGACUAcGUcacgGCcUGUCu -3'
miRNA:   3'- aGGC-AGugCGGCUGGU-CGa---CGaACAG- -5'
14113 5' -57 NC_003521.1 + 224325 0.66 0.936239
Target:  5'- cCCGUCACGgUGACUcGC-GCUgaGUCg -3'
miRNA:   3'- aGGCAGUGCgGCUGGuCGaCGAa-CAG- -5'
14113 5' -57 NC_003521.1 + 225964 0.66 0.934331
Target:  5'- cUCCGUCACGCUguuGGCCAcGCgccgcacguagugGUUgggGUCg -3'
miRNA:   3'- -AGGCAGUGCGG---CUGGU-CGa------------CGAa--CAG- -5'
14113 5' -57 NC_003521.1 + 56769 0.66 0.931401
Target:  5'- aUCaga-ACGCCGuCCAGCUGCU-GUg -3'
miRNA:   3'- -AGgcagUGCGGCuGGUCGACGAaCAg -5'
14113 5' -57 NC_003521.1 + 114035 0.66 0.931401
Target:  5'- aCCGUCGCGCucuccuccuCGACCAGcCUGaacgUGg- -3'
miRNA:   3'- aGGCAGUGCG---------GCUGGUC-GACga--ACag -5'
14113 5' -57 NC_003521.1 + 67995 0.66 0.931401
Target:  5'- aCCGaUCugGCCaaaGGCCAGCgUGUccugGUCa -3'
miRNA:   3'- aGGC-AGugCGG---CUGGUCG-ACGaa--CAG- -5'
14113 5' -57 NC_003521.1 + 29120 0.66 0.92839
Target:  5'- aUCCG-CGCGCUgcgcugcuacauccaGcACCAGCUGCagaccgUGUCc -3'
miRNA:   3'- -AGGCaGUGCGG---------------C-UGGUCGACGa-----ACAG- -5'
14113 5' -57 NC_003521.1 + 129985 0.66 0.926338
Target:  5'- aCCGUCGCuGCCGcugcGCCGGCgGCg---- -3'
miRNA:   3'- aGGCAGUG-CGGC----UGGUCGaCGaacag -5'
14113 5' -57 NC_003521.1 + 98564 0.66 0.921052
Target:  5'- gUCGUCuccgGCgGACCAGCUGUcgugGUCc -3'
miRNA:   3'- aGGCAGug--CGgCUGGUCGACGaa--CAG- -5'
14113 5' -57 NC_003521.1 + 140966 0.66 0.921052
Target:  5'- gCCGcCAUGC--GCCAGCUGCUcuUCa -3'
miRNA:   3'- aGGCaGUGCGgcUGGUCGACGAacAG- -5'
14113 5' -57 NC_003521.1 + 71494 0.67 0.915542
Target:  5'- cCCGaaacCACGCCGGCCGcgacGCUGCg---- -3'
miRNA:   3'- aGGCa---GUGCGGCUGGU----CGACGaacag -5'
14113 5' -57 NC_003521.1 + 17358 0.67 0.915542
Target:  5'- gCCGUgACGCCGGCgCGGCgGCc---- -3'
miRNA:   3'- aGGCAgUGCGGCUG-GUCGaCGaacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.