miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 110680 0.74 0.274473
Target:  5'- uAGCGCucggugGCGGCaGCGGCggCGCCGCCg -3'
miRNA:   3'- -UCGUGca----CGCCGaUGCCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 32211 0.74 0.280507
Target:  5'- cGCG-GUGacuGGCUAUGGCCGCCGCa- -3'
miRNA:   3'- uCGUgCACg--CCGAUGCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 109745 0.74 0.280507
Target:  5'- gAGCcCGcGCGaGCcGCGGUCGCCGCCa -3'
miRNA:   3'- -UCGuGCaCGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 116762 0.74 0.280507
Target:  5'- uGGCuuGUGCaGCgugGGCCGCCGCCg -3'
miRNA:   3'- -UCGugCACGcCGaugCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 73135 0.74 0.286646
Target:  5'- uGCACGgcgggggcaGCGGCgGCGG-CGCCGCCUc -3'
miRNA:   3'- uCGUGCa--------CGCCGaUGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 197340 0.74 0.286646
Target:  5'- uGGC-CGccGCGGCcagcACGGCCGCCGCgCu -3'
miRNA:   3'- -UCGuGCa-CGCCGa---UGCCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 138453 0.74 0.289131
Target:  5'- cGCGCGUGCaucGCcgGCGGCgccacaucugccaccUGCCGCCCg -3'
miRNA:   3'- uCGUGCACGc--CGa-UGCCG---------------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 154591 0.74 0.292261
Target:  5'- uGCACGUcaaggagcucaagGCcGCcgGCGuGCCGCCGCCCu -3'
miRNA:   3'- uCGUGCA-------------CGcCGa-UGC-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 43628 0.74 0.29289
Target:  5'- gAGgACGagGaggaGGCgGCGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCa-Cg---CCGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 7740 0.74 0.29289
Target:  5'- cGGCGCGaGCGGCggagGCGGCgGCaGUCCc -3'
miRNA:   3'- -UCGUGCaCGCCGa---UGCCGgCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 181455 0.74 0.29924
Target:  5'- uGCGCGgcguccaGCGGCU--GGCgCGCCGCCUg -3'
miRNA:   3'- uCGUGCa------CGCCGAugCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117192 0.74 0.30181
Target:  5'- uGCGC-UGCGcaucaucacgccgcuGCUACGGCgGCUGCCCc -3'
miRNA:   3'- uCGUGcACGC---------------CGAUGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74590 0.73 0.305696
Target:  5'- cGGCGCGgcgucccGCGGCcgGCGcgccucGCCGCCGCgCCa -3'
miRNA:   3'- -UCGUGCa------CGCCGa-UGC------CGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 75063 0.73 0.312259
Target:  5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3'
miRNA:   3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 174452 0.73 0.312259
Target:  5'- cGCugGUGUcGCUGCucGCCGCCGgCCa -3'
miRNA:   3'- uCGugCACGcCGAUGc-CGGCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 162669 0.73 0.312259
Target:  5'- cAGgAUGUGCcucGUUcGCGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCACGc--CGA-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 163384 0.73 0.318927
Target:  5'- gGGCACcaacgGCGGCauccucuCGGCCGUgGCCCc -3'
miRNA:   3'- -UCGUGca---CGCCGau-----GCCGGCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 129787 0.73 0.325702
Target:  5'- cGCACGUGCGcGCcgaGGCCGaCCGCg- -3'
miRNA:   3'- uCGUGCACGC-CGaugCCGGC-GGCGgg -5'
14136 3' -63.3 NC_003521.1 + 43477 0.73 0.325702
Target:  5'- cAGCGCG-GCGGCcgUGCuGGCCGCgGCggCCa -3'
miRNA:   3'- -UCGUGCaCGCCG--AUG-CCGGCGgCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 117235 0.73 0.325702
Target:  5'- cGGcCGCG-GCGGCUcccgGC-GCCGCCGCCa -3'
miRNA:   3'- -UC-GUGCaCGCCGA----UGcCGGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.