miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 119088 0.66 0.723372
Target:  5'- aAGCAgGUGUGGCa--GGCgCGCCugaCCg -3'
miRNA:   3'- -UCGUgCACGCCGaugCCG-GCGGcg-GG- -5'
14136 3' -63.3 NC_003521.1 + 115938 0.66 0.723372
Target:  5'- cAGUACGguuggggcgucuUGCGGCUcaguACGGC-GuuGUCCg -3'
miRNA:   3'- -UCGUGC------------ACGCCGA----UGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 87472 0.66 0.723372
Target:  5'- cAGCGC-UGUaGCgGCGGCCGaaggUGCCCa -3'
miRNA:   3'- -UCGUGcACGcCGaUGCCGGCg---GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 60713 0.66 0.723372
Target:  5'- cGGCGCGgGUcGC-ACcacGCCGCUGCCCu -3'
miRNA:   3'- -UCGUGCaCGcCGaUGc--CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 112439 0.66 0.722458
Target:  5'- cGCucagGCGGCccagGCGGCCcugguggGCgCGCCCg -3'
miRNA:   3'- uCGugcaCGCCGa---UGCCGG-------CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 145053 0.66 0.720628
Target:  5'- cGGCACGaugaccgucuggGCGGCUcggacgacuaccuGUGGCUcaGCCGCCUg -3'
miRNA:   3'- -UCGUGCa-----------CGCCGA-------------UGCCGG--CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 78460 0.66 0.720628
Target:  5'- gAGCgaccgaagACGgGgGGCUGCGcgcccacgcccgcaGUCGCCGCCUg -3'
miRNA:   3'- -UCG--------UGCaCgCCGAUGC--------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 172386 0.66 0.714205
Target:  5'- cGGCACGcgguugaGgGGCgccgGCGgaGCCGUCGCCg -3'
miRNA:   3'- -UCGUGCa------CgCCGa---UGC--CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 221624 0.66 0.714205
Target:  5'- cGCAauCGUGCauGGCcuuaGCuCGCCGCCCg -3'
miRNA:   3'- uCGU--GCACG--CCGaugcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 201351 0.66 0.714205
Target:  5'- -cCACGagGCGGCgACGGgacacgaaCCGCUGCCg -3'
miRNA:   3'- ucGUGCa-CGCCGaUGCC--------GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223404 0.66 0.714205
Target:  5'- gGGC-CGUGUGGCgcccCGGCgCGgCGUCa -3'
miRNA:   3'- -UCGuGCACGCCGau--GCCG-GCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 114838 0.66 0.714205
Target:  5'- cGCAcCGUGCucauGCUGCGccuuagcguGCUGCCGCUg -3'
miRNA:   3'- uCGU-GCACGc---CGAUGC---------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 91857 0.66 0.714205
Target:  5'- cAGCAC--GCGGaugAUGG-CGCUGCCCu -3'
miRNA:   3'- -UCGUGcaCGCCga-UGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 154233 0.66 0.714205
Target:  5'- gAGCGCuucuucccCGGCUGCGGCgUGCCcuGCCUc -3'
miRNA:   3'- -UCGUGcac-----GCCGAUGCCG-GCGG--CGGG- -5'
14136 3' -63.3 NC_003521.1 + 160538 0.66 0.714205
Target:  5'- cAGCACGU-CGG--ACGcGCCGUCGUCUu -3'
miRNA:   3'- -UCGUGCAcGCCgaUGC-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 99955 0.66 0.714205
Target:  5'- gGGgGCG-GCGGCgccuCGGCCGagaCCGCg- -3'
miRNA:   3'- -UCgUGCaCGCCGau--GCCGGC---GGCGgg -5'
14136 3' -63.3 NC_003521.1 + 198020 0.66 0.714205
Target:  5'- uGC-CGuUGCGGC-GCGuGCaGCCGCCg -3'
miRNA:   3'- uCGuGC-ACGCCGaUGC-CGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 1123 0.66 0.714205
Target:  5'- -cCACGagGCGGCgACGGgacacgaaCCGCUGCCg -3'
miRNA:   3'- ucGUGCa-CGCCGaUGCC--------GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 185356 0.66 0.714205
Target:  5'- cGGCAag-GCGGCgcaGuGCCucuuccagcgcGCCGCCCa -3'
miRNA:   3'- -UCGUgcaCGCCGaugC-CGG-----------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 118005 0.66 0.714205
Target:  5'- --gACGguaGCGGCgGCGuGUCGCUGCCg -3'
miRNA:   3'- ucgUGCa--CGCCGaUGC-CGGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.