miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 166029 0.66 0.732472
Target:  5'- -cCGCGUcucGCcGCUACcGCUGCCGCCg -3'
miRNA:   3'- ucGUGCA---CGcCGAUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 87910 0.66 0.732472
Target:  5'- gAGCaACGacuccUGGCU--GGCCGCCGCgCCg -3'
miRNA:   3'- -UCG-UGCac---GCCGAugCCGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 66581 0.66 0.732472
Target:  5'- cGCaACGUGCGucugaGCUccgACGcGCCcCUGCCCg -3'
miRNA:   3'- uCG-UGCACGC-----CGA---UGC-CGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 80865 0.66 0.732472
Target:  5'- aGGCugGguaGCuGGCacuccucggUGCGGUgGuuGCCCa -3'
miRNA:   3'- -UCGugCa--CG-CCG---------AUGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240109 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 77454 0.66 0.732472
Target:  5'- cGUugGUGCccGUgacACuGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGc-CGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 193305 0.66 0.732472
Target:  5'- gGGaCACGcUGCucaGCUACGGCUGCaucgcgGUCCg -3'
miRNA:   3'- -UC-GUGC-ACGc--CGAUGCCGGCGg-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 165878 0.66 0.732472
Target:  5'- uGCACGUGCucgGGCgGCGGguacaccacccCgCGCUGCCg -3'
miRNA:   3'- uCGUGCACG---CCGaUGCC-----------G-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 44384 0.66 0.72702
Target:  5'- cGCGCGgcaGcCGGCcgacccggGCGacagcgacugucuguGCCGCUGCCCg -3'
miRNA:   3'- uCGUGCa--C-GCCGa-------UGC---------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 70077 0.66 0.72702
Target:  5'- cAGCACGUacaGCGGguugccgcagggcacCUGgcCGGCgUGCCGCCg -3'
miRNA:   3'- -UCGUGCA---CGCC---------------GAU--GCCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 127812 0.66 0.724285
Target:  5'- cAGCACGUGCcggucgaaGGUgcccgggugguagugGCGcCCGCCGCUg -3'
miRNA:   3'- -UCGUGCACG--------CCGa--------------UGCcGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 197581 0.66 0.723372
Target:  5'- gAGCugGcGCuGCUACucgcccuucCCGCUGCCCg -3'
miRNA:   3'- -UCGugCaCGcCGAUGcc-------GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 130277 0.66 0.723372
Target:  5'- gGGCGCccucucCGGCUACcugggcgaGGCCGCgGCgCCg -3'
miRNA:   3'- -UCGUGcac---GCCGAUG--------CCGGCGgCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 197365 0.66 0.723372
Target:  5'- uGGCGuacauCGUuuugGagaGGCUcUGGCuCGCCGCCCg -3'
miRNA:   3'- -UCGU-----GCA----Cg--CCGAuGCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 138789 0.66 0.723372
Target:  5'- cGGC-CGU---GCUGCGcGCCGUgGCCCa -3'
miRNA:   3'- -UCGuGCAcgcCGAUGC-CGGCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 119088 0.66 0.723372
Target:  5'- aAGCAgGUGUGGCa--GGCgCGCCugaCCg -3'
miRNA:   3'- -UCGUgCACGCCGaugCCG-GCGGcg-GG- -5'
14136 3' -63.3 NC_003521.1 + 162881 0.66 0.723372
Target:  5'- gGGCGCGcGCaGGUg--GGCCGCUacuGCCUg -3'
miRNA:   3'- -UCGUGCaCG-CCGaugCCGGCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 27091 0.66 0.723372
Target:  5'- aGGCA-GUGCaGGCUcucgACGGCgCGCagGCCg -3'
miRNA:   3'- -UCGUgCACG-CCGA----UGCCG-GCGg-CGGg -5'
14136 3' -63.3 NC_003521.1 + 87472 0.66 0.723372
Target:  5'- cAGCGC-UGUaGCgGCGGCCGaaggUGCCCa -3'
miRNA:   3'- -UCGUGcACGcCGaUGCCGGCg---GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 115938 0.66 0.723372
Target:  5'- cAGUACGguuggggcgucuUGCGGCUcaguACGGC-GuuGUCCg -3'
miRNA:   3'- -UCGUGC------------ACGCCGA----UGCCGgCggCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.