miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 16042 0.66 0.723372
Target:  5'- cGCACGacGUGG-UGCGGgCGCUGCUg -3'
miRNA:   3'- uCGUGCa-CGCCgAUGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 16239 0.72 0.386775
Target:  5'- gAGUGCGaaauguaccucagccUGCGGCUGC-GCUGCCGCUg -3'
miRNA:   3'- -UCGUGC---------------ACGCCGAUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 16714 0.7 0.445629
Target:  5'- cGCGCGUGaugcgcggcgaguuCGGCgaccgcCGGCgCGCgCGCCCg -3'
miRNA:   3'- uCGUGCAC--------------GCCGau----GCCG-GCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 17004 0.69 0.500219
Target:  5'- aGGCGCccGCGGUgGCGGCgGCgcagGCCCg -3'
miRNA:   3'- -UCGUGcaCGCCGaUGCCGgCGg---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 17193 0.72 0.353863
Target:  5'- cGCACGUcGgGGCUAUGGCgagagaagagCGUCGCCg -3'
miRNA:   3'- uCGUGCA-CgCCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 17457 0.7 0.473828
Target:  5'- cGCgAUGUcGCuGCUGaccaaGGCCGCCGCCg -3'
miRNA:   3'- uCG-UGCA-CGcCGAUg----CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 17706 0.69 0.52724
Target:  5'- -cCugGUGCuGCgcgagACGGCCGCCauCCCg -3'
miRNA:   3'- ucGugCACGcCGa----UGCCGGCGGc-GGG- -5'
14136 3' -63.3 NC_003521.1 + 18170 0.68 0.582742
Target:  5'- gGGCAgCGUGgaGGCgcUGCGcGCCuGCCgGCCCu -3'
miRNA:   3'- -UCGU-GCACg-CCG--AUGC-CGG-CGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 18706 0.76 0.224781
Target:  5'- cGGCGCGaucCGGCUGUGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCac-GCCGAUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 19560 0.66 0.704978
Target:  5'- gAGCGUGUGCGGCUucuGCuGGCUGgUGUUCc -3'
miRNA:   3'- -UCGUGCACGCCGA---UG-CCGGCgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 19906 0.69 0.545553
Target:  5'- --gGCGUGCGGgaGCGGCUgGUgGUCCu -3'
miRNA:   3'- ucgUGCACGCCgaUGCCGG-CGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 20373 0.7 0.448154
Target:  5'- aGGUucacCGUGUGGCUGCGGguguaCGCCGUgCu -3'
miRNA:   3'- -UCGu---GCACGCCGAUGCCg----GCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 22412 0.66 0.704978
Target:  5'- cGCugGccaugcugcGCGGCgu-GGCCGaguaCCGCCCg -3'
miRNA:   3'- uCGugCa--------CGCCGaugCCGGC----GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 22459 0.7 0.482549
Target:  5'- cGGCACGccUGGCUcACGGUgGCCuGCCUg -3'
miRNA:   3'- -UCGUGCacGCCGA-UGCCGgCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 22588 0.71 0.407148
Target:  5'- cGCAccCGUGaCGGCcccUGCGGUCGCCugaccuccguuGCCCg -3'
miRNA:   3'- uCGU--GCAC-GCCG---AUGCCGGCGG-----------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 22788 0.69 0.545553
Target:  5'- -cUACcUGCGGacGCcGCCGCCGCCCa -3'
miRNA:   3'- ucGUGcACGCCgaUGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 23395 0.68 0.570586
Target:  5'- gAGCAcCGUGUuccugugcugcaccGGCUucauGCCGCCGCUCa -3'
miRNA:   3'- -UCGU-GCACG--------------CCGAugc-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 23480 0.7 0.482549
Target:  5'- aAGUACGa--GGac-CGGCCGCCGUCCg -3'
miRNA:   3'- -UCGUGCacgCCgauGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 24189 0.66 0.732472
Target:  5'- aAGC-CGgGCGGCauggGCGGaaCGUCGUCCa -3'
miRNA:   3'- -UCGuGCaCGCCGa---UGCCg-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 24481 0.66 0.704978
Target:  5'- cAGCGCGUGCuggaucuacugGcGCUACGaGCgGCCucuuuCCCg -3'
miRNA:   3'- -UCGUGCACG-----------C-CGAUGC-CGgCGGc----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.