miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 73 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 151 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 354 0.72 0.376086
Target:  5'- gAGCugcCGgagGCGGCgccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG---AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 1123 0.66 0.714205
Target:  5'- -cCACGagGCGGCgACGGgacacgaaCCGCUGCCg -3'
miRNA:   3'- ucGUGCa-CGCCGaUGCC--------GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 2324 0.67 0.629862
Target:  5'- uGCGCGccggccuccUGgGGCUGCugacccugGGCCGCgucuccgcccCGCCCg -3'
miRNA:   3'- uCGUGC---------ACgCCGAUG--------CCGGCG----------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 3624 0.71 0.407148
Target:  5'- aAGgAUGUuguuguucucuaGCGuGCcACGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCA------------CGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 5303 0.7 0.456628
Target:  5'- cGGCAUGUuucGCGGggGCGGCgugcccCGCCGgCCg -3'
miRNA:   3'- -UCGUGCA---CGCCgaUGCCG------GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 5528 0.76 0.219758
Target:  5'- cAGCGacgGUGaCGGCagccggcGCGGCCGCCGCCa -3'
miRNA:   3'- -UCGUg--CAC-GCCGa------UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 6399 0.67 0.658199
Target:  5'- cAGCuaccGCG-GCGGCgACGGgucUUGCCGCCUc -3'
miRNA:   3'- -UCG----UGCaCGCCGaUGCC---GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 7740 0.74 0.29289
Target:  5'- cGGCGCGaGCGGCggagGCGGCgGCaGUCCc -3'
miRNA:   3'- -UCGUGCaCGCCGa---UGCCGgCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 8898 0.67 0.647818
Target:  5'- uGGuCugGUaGCuGGCUACGgcgcgggagaagaGCCGCUGCCg -3'
miRNA:   3'- -UC-GugCA-CG-CCGAUGC-------------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 11830 0.67 0.629862
Target:  5'- uAGCucCGUGCuGC--CGGUccugCGCCGCCCg -3'
miRNA:   3'- -UCGu-GCACGcCGauGCCG----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 13192 0.66 0.732472
Target:  5'- --gGCGUGCcGCUcgGGCCGCCGUg- -3'
miRNA:   3'- ucgUGCACGcCGAugCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 13856 0.68 0.573386
Target:  5'- cGGCGCGggggucucUGCGG--GCGG-CGCCGCCa -3'
miRNA:   3'- -UCGUGC--------ACGCCgaUGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 13907 0.68 0.601538
Target:  5'- cGGCGCGgagGgGGCcGCGGagGCCGCgCu -3'
miRNA:   3'- -UCGUGCa--CgCCGaUGCCggCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 14201 0.72 0.368575
Target:  5'- aAGCugGUGU-GCUGCGGCgagccccugaCGCCGCUg -3'
miRNA:   3'- -UCGugCACGcCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 14390 0.66 0.704978
Target:  5'- gAGCugGcGC-GCUACGGCgUGUCGCgCu -3'
miRNA:   3'- -UCGugCaCGcCGAUGCCG-GCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 14448 0.71 0.407148
Target:  5'- cGGC-CcUGCGGCgGCGucaGCCGCCGCUCc -3'
miRNA:   3'- -UCGuGcACGCCGaUGC---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14742 0.67 0.629862
Target:  5'- uGgGCGUGaCGGgc-CGGCCGCgGCCg -3'
miRNA:   3'- uCgUGCAC-GCCgauGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 15213 0.68 0.601538
Target:  5'- cGaCAuCGUGgGGCUgcagGCGGCCgagcgcgagGCCGCCg -3'
miRNA:   3'- uC-GU-GCACgCCGA----UGCCGG---------CGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.