miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 113037 1.11 0.000805
Target:  5'- gAGCACGUGCGGCUACGGCCGCCGCCCg -3'
miRNA:   3'- -UCGUGCACGCCGAUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 115386 0.8 0.122374
Target:  5'- cGGCAUGUGCagGGCgcggGCGGCCGCCacgGCCUc -3'
miRNA:   3'- -UCGUGCACG--CCGa---UGCCGGCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 116362 0.79 0.128394
Target:  5'- gAGCGCG-GCGGCgaacGCGuGCCGCCgcgGCCCa -3'
miRNA:   3'- -UCGUGCaCGCCGa---UGC-CGGCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 138821 0.79 0.134688
Target:  5'- uGGCGCGccugauggcgGCGGCUACGGCCuGCgGCCa -3'
miRNA:   3'- -UCGUGCa---------CGCCGAUGCCGG-CGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 96531 0.79 0.13794
Target:  5'- cAGCGCGUGCGGCagcaGCGaGUCGCCgugcucGCCCa -3'
miRNA:   3'- -UCGUGCACGCCGa---UGC-CGGCGG------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 110471 0.78 0.148133
Target:  5'- cGCACG-GCGcCUGCGGCCGCacguugaGCCCg -3'
miRNA:   3'- uCGUGCaCGCcGAUGCCGGCGg------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 179576 0.78 0.148133
Target:  5'- aGGCGCGUGUGGCgaaugaaguucUGCaGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCACGCCG-----------AUG-CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 116874 0.78 0.159008
Target:  5'- cGCGCGcaguggcGCGGCUGCGGCgGCgCGCCg -3'
miRNA:   3'- uCGUGCa------CGCCGAUGCCGgCG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 179379 0.78 0.159008
Target:  5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3'
miRNA:   3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 127536 0.78 0.166653
Target:  5'- gAGCAUGUGCGGCgGCaGCaCGCCGUCg -3'
miRNA:   3'- -UCGUGCACGCCGaUGcCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 200379 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240700 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 151 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 44361 0.77 0.182938
Target:  5'- cGCGC-UGgGGCUGCGGCC-CaCGCCCg -3'
miRNA:   3'- uCGUGcACgCCGAUGCCGGcG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103654 0.77 0.196061
Target:  5'- cAGCuCGgcgGCGGCcgcUGCGGCCGCgGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCG---AUGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 137158 0.76 0.200614
Target:  5'- cGcCAUGgccGCGGCcgcaGCGGCCGCCGCCg -3'
miRNA:   3'- uC-GUGCa--CGCCGa---UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 166217 0.76 0.209998
Target:  5'- uGGCGCG-GCGGCga-GGCgCGCCGgCCg -3'
miRNA:   3'- -UCGUGCaCGCCGaugCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 137578 0.76 0.21483
Target:  5'- uGCACGcGCGaaccguuauuCUugGGCCGCCGCCUg -3'
miRNA:   3'- uCGUGCaCGCc---------GAugCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 112364 0.76 0.219758
Target:  5'- cGCACGcgGCGGCUGCGGCgucUCGUCCa -3'
miRNA:   3'- uCGUGCa-CGCCGAUGCCGgc-GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 5528 0.76 0.219758
Target:  5'- cAGCGacgGUGaCGGCagccggcGCGGCCGCCGCCa -3'
miRNA:   3'- -UCGUg--CAC-GCCGa------UGCCGGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.