miRNA display CGI


Results 1 - 20 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 142351 0.74 0.274473
Target:  5'- cGcCACG-GCcGCcGCGGCCGCCGCCg -3'
miRNA:   3'- uC-GUGCaCGcCGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 104158 0.75 0.229901
Target:  5'- cGGCGCcuGUGUGGCUucuuGCucugucGCCGCCGCCCc -3'
miRNA:   3'- -UCGUG--CACGCCGA----UGc-----CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 194555 0.75 0.234594
Target:  5'- cGCGuCGgGCGccucgucgaaauaGCUugGGCCGCUGCCCa -3'
miRNA:   3'- uCGU-GCaCGC-------------CGAugCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117631 0.75 0.23512
Target:  5'- cGGCGCcguaUGCGGcCUACGGucccCCGCCGCCg -3'
miRNA:   3'- -UCGUGc---ACGCC-GAUGCC----GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 196098 0.75 0.245309
Target:  5'- cAGCACGaaaUGCGGCgcGCGGuauagauCCGCCgGCCCg -3'
miRNA:   3'- -UCGUGC---ACGCCGa-UGCC-------GGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 134512 0.75 0.251374
Target:  5'- aGGCagGCGaUGC-GC-ACGGCCGCCGCCUg -3'
miRNA:   3'- -UCG--UGC-ACGcCGaUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103261 0.75 0.251374
Target:  5'- cGCGCGUGCacuGCUGCucGGCCGgCGCCg -3'
miRNA:   3'- uCGUGCACGc--CGAUG--CCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 58041 0.75 0.256995
Target:  5'- cGCGCGUGuuGCUGCuGGCgGCCaCCCg -3'
miRNA:   3'- uCGUGCACgcCGAUG-CCGgCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 31713 0.75 0.262717
Target:  5'- cAGCAUGUGCGcguGCUgggacgccGCGGCCaCCGCCUc -3'
miRNA:   3'- -UCGUGCACGC---CGA--------UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 18706 0.76 0.224781
Target:  5'- cGGCGCGaucCGGCUGUGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCac-GCCGAUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 217333 0.76 0.224781
Target:  5'- cAGCACG-GUGGCggACGGCgGCCgGUCCu -3'
miRNA:   3'- -UCGUGCaCGCCGa-UGCCGgCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 132178 0.76 0.224781
Target:  5'- aAGCacACGUGCGcGCUGauCGGCaGCCGCCUg -3'
miRNA:   3'- -UCG--UGCACGC-CGAU--GCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 138821 0.79 0.134688
Target:  5'- uGGCGCGccugauggcgGCGGCUACGGCCuGCgGCCa -3'
miRNA:   3'- -UCGUGCa---------CGCCGAUGCCGG-CGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 116874 0.78 0.159008
Target:  5'- cGCGCGcaguggcGCGGCUGCGGCgGCgCGCCg -3'
miRNA:   3'- uCGUGCa------CGCCGAUGCCGgCG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 127536 0.78 0.166653
Target:  5'- gAGCAUGUGCGGCgGCaGCaCGCCGUCg -3'
miRNA:   3'- -UCGUGCACGCCGaUGcCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 200379 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 44361 0.77 0.182938
Target:  5'- cGCGC-UGgGGCUGCGGCC-CaCGCCCg -3'
miRNA:   3'- uCGUGcACgCCGAUGCCGGcG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 137158 0.76 0.200614
Target:  5'- cGcCAUGgccGCGGCcgcaGCGGCCGCCGCCg -3'
miRNA:   3'- uC-GUGCa--CGCCGa---UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 5528 0.76 0.219758
Target:  5'- cAGCGacgGUGaCGGCagccggcGCGGCCGCCGCCa -3'
miRNA:   3'- -UCGUg--CAC-GCCGa------UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 112364 0.76 0.219758
Target:  5'- cGCACGcgGCGGCUGCGGCgucUCGUCCa -3'
miRNA:   3'- uCGUGCa-CGCCGAUGCCGgc-GGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.