miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 113037 1.11 0.000805
Target:  5'- gAGCACGUGCGGCUACGGCCGCCGCCCg -3'
miRNA:   3'- -UCGUGCACGCCGAUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 114248 0.75 0.256995
Target:  5'- cGGCACGacgGCGGCUuc--CCGCUGCCCa -3'
miRNA:   3'- -UCGUGCa--CGCCGAugccGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 110680 0.74 0.274473
Target:  5'- uAGCGCucggugGCGGCaGCGGCggCGCCGCCg -3'
miRNA:   3'- -UCGUGca----CGCCGaUGCCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 91261 0.66 0.733378
Target:  5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3'
miRNA:   3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 179576 0.78 0.148133
Target:  5'- aGGCGCGUGUGGCgaaugaaguucUGCaGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCACGCCG-----------AUG-CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 179379 0.78 0.159008
Target:  5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3'
miRNA:   3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240700 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103654 0.77 0.196061
Target:  5'- cAGCuCGgcgGCGGCcgcUGCGGCCGCgGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCG---AUGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 34631 0.76 0.219758
Target:  5'- aAGCugGUGauCGuGCUcGCGGCCcugGCCGCCCu -3'
miRNA:   3'- -UCGugCAC--GC-CGA-UGCCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 90807 0.75 0.250263
Target:  5'- cGCACGUGCacgugaagguGGCgucgucgUGCGGCgggugcgCGCCGCCCg -3'
miRNA:   3'- uCGUGCACG----------CCG-------AUGCCG-------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74351 0.75 0.23512
Target:  5'- uGGCGCugcugcGCGGCUACGGCCagugcggcgacgGCuCGCCCu -3'
miRNA:   3'- -UCGUGca----CGCCGAUGCCGG------------CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 137578 0.76 0.21483
Target:  5'- uGCACGcGCGaaccguuauuCUugGGCCGCCGCCUg -3'
miRNA:   3'- uCGUGCaCGCc---------GAugCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 116362 0.79 0.128394
Target:  5'- gAGCGCG-GCGGCgaacGCGuGCCGCCgcgGCCCa -3'
miRNA:   3'- -UCGUGCaCGCCGa---UGC-CGGCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 155147 0.75 0.240438
Target:  5'- cGGCGCGUGCuggacgccGGCUcggaacagcugGCGGCCGCgGCUg -3'
miRNA:   3'- -UCGUGCACG--------CCGA-----------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 96531 0.79 0.13794
Target:  5'- cAGCGCGUGCGGCagcaGCGaGUCGCCgugcucGCCCa -3'
miRNA:   3'- -UCGUGCACGCCGa---UGC-CGGCGG------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 166217 0.76 0.209998
Target:  5'- uGGCGCG-GCGGCga-GGCgCGCCGgCCg -3'
miRNA:   3'- -UCGUGCaCGCCGaugCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 204893 0.75 0.245856
Target:  5'- uGGC-CGcGCGGCgggACGGUgGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa--UGCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 76360 0.75 0.262717
Target:  5'- cGGCgGCGgcaGCGGCgaccgugACGGCCGCgGCCg -3'
miRNA:   3'- -UCG-UGCa--CGCCGa------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 110471 0.78 0.148133
Target:  5'- cGCACG-GCGcCUGCGGCCGCacguugaGCCCg -3'
miRNA:   3'- uCGUGCaCGCcGAUGCCGGCGg------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 151 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.