miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 91261 0.66 0.733378
Target:  5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3'
miRNA:   3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149658 0.66 0.686375
Target:  5'- -cCugGUGCgGGCUGCccgacaucgugGGCC-CCGCCg -3'
miRNA:   3'- ucGugCACG-CCGAUG-----------CCGGcGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 56425 0.66 0.677012
Target:  5'- cGGUACucGCGGUcgaaGGCCGCCucgugGCCCa -3'
miRNA:   3'- -UCGUGcaCGCCGaug-CCGGCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 69208 0.66 0.686375
Target:  5'- --gACGUcgGCGGC-ACucccGCCGCCGCUCg -3'
miRNA:   3'- ucgUGCA--CGCCGaUGc---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 172764 0.66 0.676074
Target:  5'- cGGCAuucuggcugccacCG-GgGGCgccGCGGaccaCGCCGCCCg -3'
miRNA:   3'- -UCGU-------------GCaCgCCGa--UGCCg---GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117158 0.66 0.68544
Target:  5'- cAGCGCGc-CGGCUcccuccaagccuaACccgccgucgcuGCCGCCGCCCg -3'
miRNA:   3'- -UCGUGCacGCCGA-------------UGc----------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 141301 0.66 0.677012
Target:  5'- uGCAgGUGCGG--GCGGC-GCCccggaGCCCu -3'
miRNA:   3'- uCGUgCACGCCgaUGCCGgCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 80007 0.66 0.686375
Target:  5'- gGGCuuGgGCGGCUucugcuGCGGCUGCUGUUUc -3'
miRNA:   3'- -UCGugCaCGCCGA------UGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 207037 0.66 0.677012
Target:  5'- cAGCAguCG-GUGGCUG-GGCCGCagGCCg -3'
miRNA:   3'- -UCGU--GCaCGCCGAUgCCGGCGg-CGGg -5'
14136 3' -63.3 NC_003521.1 + 168936 0.66 0.686375
Target:  5'- gGGCGCa---GGC-AgGGCCGCCGCUg -3'
miRNA:   3'- -UCGUGcacgCCGaUgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 32201 0.66 0.677012
Target:  5'- gGGCAUG-GUGGggAUGGCucgcaaCGCgGCCCa -3'
miRNA:   3'- -UCGUGCaCGCCgaUGCCG------GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 56980 0.66 0.676074
Target:  5'- uGCGCGagUGCaGGCUcuccucgAUGGCCGCgGUCa -3'
miRNA:   3'- uCGUGC--ACG-CCGA-------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 142180 0.66 0.676074
Target:  5'- cGC-CGUcgucgacGCcGCUACcGCCGCCGCCg -3'
miRNA:   3'- uCGuGCA-------CGcCGAUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 187580 0.66 0.686375
Target:  5'- aAGUccGCG-GgGGCUucgccgGCGGUCGCuuCGCCCg -3'
miRNA:   3'- -UCG--UGCaCgCCGA------UGCCGGCG--GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73623 0.66 0.674197
Target:  5'- cGGCGCGccUGCcagcccaagcagaaGGCcuccgccGCGGCCGCCuccaagacGCCCg -3'
miRNA:   3'- -UCGUGC--ACG--------------CCGa------UGCCGGCGG--------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 213610 0.66 0.677012
Target:  5'- aGGC-UGuUGgGGUgGCGGUCGCCGCgCa -3'
miRNA:   3'- -UCGuGC-ACgCCGaUGCCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 145864 0.66 0.677012
Target:  5'- gGGCcCG-GCGGCggGCGGCgCcgacgacgagGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa-UGCCG-G----------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 34450 0.66 0.677012
Target:  5'- aGGCGC-UGCgGGCcugGgGGUCGUCGCCg -3'
miRNA:   3'- -UCGUGcACG-CCGa--UgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 128912 0.66 0.686375
Target:  5'- cGCugGaUGCGGUUGagGGCCugGCgCGCCa -3'
miRNA:   3'- uCGugC-ACGCCGAUg-CCGG--CG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 160773 0.66 0.677012
Target:  5'- cGCGCGUGCcGCcgGCGGCaCGCgGgCg -3'
miRNA:   3'- uCGUGCACGcCGa-UGCCG-GCGgCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.