miRNA display CGI


Results 1 - 20 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 240700 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240622 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 240109 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 238609 0.67 0.667618
Target:  5'- uAGCAgG-GCcugGGCgUAgGGCCgGCCGUCCg -3'
miRNA:   3'- -UCGUgCaCG---CCG-AUgCCGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 238522 0.69 0.542793
Target:  5'- gAGCAgGUGCGagaGCUcguCGGCCagcggguagaggugGCCGUCCu -3'
miRNA:   3'- -UCGUgCACGC---CGAu--GCCGG--------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 238452 0.67 0.616633
Target:  5'- aGGCGCaggGCGGCcucggcgggcgggGCGGagaCGCgGCCCa -3'
miRNA:   3'- -UCGUGca-CGCCGa------------UGCCg--GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 235498 0.7 0.465186
Target:  5'- cGC-CGgagucGCGGCcgGCGGggcaCGCCGCCCc -3'
miRNA:   3'- uCGuGCa----CGCCGa-UGCCg---GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 235286 0.66 0.686375
Target:  5'- --gGCG-GCGGCcgcgcCGGCUGCCGUCa -3'
miRNA:   3'- ucgUGCaCGCCGau---GCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 234982 0.67 0.648763
Target:  5'- aGGCcuACGUGCGGUcccaGCGGuaGCgGUCCc -3'
miRNA:   3'- -UCG--UGCACGCCGa---UGCCggCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 234845 0.68 0.591187
Target:  5'- gAGCAaGUucaccugguggaaGCGGUUACGGCaCGCUaCCCg -3'
miRNA:   3'- -UCGUgCA-------------CGCCGAUGCCG-GCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 234733 0.66 0.686375
Target:  5'- uAGC-CGUgGCGGa-AC-GCCGCCGCaCCg -3'
miRNA:   3'- -UCGuGCA-CGCCgaUGcCGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 233056 0.71 0.42327
Target:  5'- aGGCuCGUcuGCGGCgucugcugggACuGCCGCCGCCUc -3'
miRNA:   3'- -UCGuGCA--CGCCGa---------UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 232791 0.67 0.616633
Target:  5'- cAGCugGUucucaacgccuccgGCGGUcuggagcUACGG-CGCUGCCCc -3'
miRNA:   3'- -UCGugCA--------------CGCCG-------AUGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 232406 0.69 0.50916
Target:  5'- uGCGCcUGCGGC-ACGGCaaCGCCagcGCCUg -3'
miRNA:   3'- uCGUGcACGCCGaUGCCG--GCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 227597 0.69 0.518169
Target:  5'- aGGCAUG-GCaGGCUugGGC-GCCggucgGCCCu -3'
miRNA:   3'- -UCGUGCaCG-CCGAugCCGgCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 226896 0.71 0.407148
Target:  5'- gGGCACcacgGCGGCcagcGCGGCCuccGCgGCCCc -3'
miRNA:   3'- -UCGUGca--CGCCGa---UGCCGG---CGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 226361 0.7 0.465186
Target:  5'- uAGCGCc-GCGGgaGCGGCggcugaCGCCGCCg -3'
miRNA:   3'- -UCGUGcaCGCCgaUGCCG------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 226071 0.72 0.361167
Target:  5'- aGGCGCGcccCGGCcGCGGCCGgcccgucaCGCCCa -3'
miRNA:   3'- -UCGUGCac-GCCGaUGCCGGCg-------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 225587 0.72 0.346664
Target:  5'- uGGCGCucgGCGGCcucgcgcuCGGCCGCCugcaGCCCc -3'
miRNA:   3'- -UCGUGca-CGCCGau------GCCGGCGG----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 225175 0.66 0.732472
Target:  5'- cGGCGCuGUGCuGCcgcucgaagAUGGCCuugaaGUCGCCCa -3'
miRNA:   3'- -UCGUG-CACGcCGa--------UGCCGG-----CGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.