miRNA display CGI


Results 61 - 80 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 154233 0.66 0.714205
Target:  5'- gAGCGCuucuucccCGGCUGCGGCgUGCCcuGCCUc -3'
miRNA:   3'- -UCGUGcac-----GCCGAUGCCG-GCGG--CGGG- -5'
14136 3' -63.3 NC_003521.1 + 99955 0.66 0.714205
Target:  5'- gGGgGCG-GCGGCgccuCGGCCGagaCCGCg- -3'
miRNA:   3'- -UCgUGCaCGCCGau--GCCGGC---GGCGgg -5'
14136 3' -63.3 NC_003521.1 + 137443 0.66 0.713285
Target:  5'- gAGCACGcGCGGCUgcccgacACGGuCUGCgUGCaCUa -3'
miRNA:   3'- -UCGUGCaCGCCGA-------UGCC-GGCG-GCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 207583 0.66 0.708675
Target:  5'- uGGCGUGUGCcagcucaacgccGGCUgcaagauccgucuggGCGGCuCGCCGgCCu -3'
miRNA:   3'- -UCGUGCACG------------CCGA---------------UGCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 164819 0.66 0.705903
Target:  5'- gAGCGCccGCGGgggaggaggaaccgGCGGCCGgCGCCa -3'
miRNA:   3'- -UCGUGcaCGCCga------------UGCCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 140009 0.66 0.704978
Target:  5'- gGGCGagugguaGUcGCGGUaGCGGCCGCagaagGCCa -3'
miRNA:   3'- -UCGUg------CA-CGCCGaUGCCGGCGg----CGGg -5'
14136 3' -63.3 NC_003521.1 + 116325 0.66 0.704978
Target:  5'- -cUACGUggGCGGCUuccucacgcgcuACGaCCaGCCGCCCg -3'
miRNA:   3'- ucGUGCA--CGCCGA------------UGCcGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 91687 0.66 0.704978
Target:  5'- cAGCGgGcuccuggGCGuGCUGCGGUCugcguGCCGCUCc -3'
miRNA:   3'- -UCGUgCa------CGC-CGAUGCCGG-----CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 150727 0.66 0.704978
Target:  5'- cGGC-CGUG-GGCcACguccugGGCCgGCUGCCCg -3'
miRNA:   3'- -UCGuGCACgCCGaUG------CCGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149021 0.66 0.704978
Target:  5'- gGGUGCaggGUGgGGgUGCccaaCCGCCGCCCg -3'
miRNA:   3'- -UCGUG---CACgCCgAUGcc--GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 19560 0.66 0.704978
Target:  5'- gAGCGUGUGCGGCUucuGCuGGCUGgUGUUCc -3'
miRNA:   3'- -UCGUGCACGCCGA---UG-CCGGCgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14390 0.66 0.704978
Target:  5'- gAGCugGcGC-GCUACGGCgUGUCGCgCu -3'
miRNA:   3'- -UCGugCaCGcCGAUGCCG-GCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 129182 0.66 0.704978
Target:  5'- cGUGCG-GCGGUUugGGUuuCGCCGgCg -3'
miRNA:   3'- uCGUGCaCGCCGAugCCG--GCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 24481 0.66 0.704978
Target:  5'- cAGCGCGUGCuggaucuacugGcGCUACGaGCgGCCucuuuCCCg -3'
miRNA:   3'- -UCGUGCACG-----------C-CGAUGC-CGgCGGc----GGG- -5'
14136 3' -63.3 NC_003521.1 + 22412 0.66 0.704978
Target:  5'- cGCugGccaugcugcGCGGCgu-GGCCGaguaCCGCCCg -3'
miRNA:   3'- uCGugCa--------CGCCGaugCCGGC----GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 76535 0.66 0.704978
Target:  5'- uGGC---UGCuGCUGCGGUgGCUGUCCa -3'
miRNA:   3'- -UCGugcACGcCGAUGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 190905 0.66 0.704978
Target:  5'- uGCGCGauccGCGGuCUcuucuaagAUGGCUGCCGUCg -3'
miRNA:   3'- uCGUGCa---CGCC-GA--------UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 106598 0.66 0.704978
Target:  5'- cGGCGCGgGCaGCUAcuCGGCCaaGCgGCaCCa -3'
miRNA:   3'- -UCGUGCaCGcCGAU--GCCGG--CGgCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 155660 0.66 0.704053
Target:  5'- uGCugGgugGCGGCggaGGUcuggacgauucauCGCCGCCg -3'
miRNA:   3'- uCGugCa--CGCCGaugCCG-------------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 171301 0.66 0.701273
Target:  5'- gGGCugGaagGCGGUgcugggccucaacGCGGCCugcGCCGUCUa -3'
miRNA:   3'- -UCGugCa--CGCCGa------------UGCCGG---CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.