miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 25391 0.67 0.619467
Target:  5'- cAGCACccGCGGCUcugcuucACGGaggGCuCGCCCa -3'
miRNA:   3'- -UCGUGcaCGCCGA-------UGCCgg-CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 25818 0.67 0.619467
Target:  5'- uGGCG-GUGCGuuacgagacgccGCUGgcucgcaccccccUGGCCGCCGCCa -3'
miRNA:   3'- -UCGUgCACGC------------CGAU-------------GCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 26633 0.68 0.610968
Target:  5'- cAGgACGUGCGGC-ACGuuGCCaccgaaCUGCCCg -3'
miRNA:   3'- -UCgUGCACGCCGaUGC--CGGc-----GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 27091 0.66 0.723372
Target:  5'- aGGCA-GUGCaGGCUcucgACGGCgCGCagGCCg -3'
miRNA:   3'- -UCGUgCACG-CCGA----UGCCG-GCGg-CGGg -5'
14136 3' -63.3 NC_003521.1 + 27485 0.67 0.648763
Target:  5'- cAGCGCGUuauccucuaCGGCUACGGC-GCCaUCCu -3'
miRNA:   3'- -UCGUGCAc--------GCCGAUGCCGgCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 27509 0.67 0.658199
Target:  5'- -cCACGgGgGGCgUGCGGCCcgaGgCGCCCa -3'
miRNA:   3'- ucGUGCaCgCCG-AUGCCGG---CgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 28854 0.71 0.407148
Target:  5'- gAGCuGCG-GCGGC-GCGGCacggucgaGUCGCCCa -3'
miRNA:   3'- -UCG-UGCaCGCCGaUGCCGg-------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 30388 0.69 0.52724
Target:  5'- uAGCACaGUaC-GCUGCcGUCGCCGCCCa -3'
miRNA:   3'- -UCGUG-CAcGcCGAUGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 31078 0.68 0.582742
Target:  5'- cGGUACuc-CGGCUGCcguGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGcacGCCGAUG---CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 31245 0.66 0.732472
Target:  5'- cGCuACGUGCGcCccCGGacCCGCCGCCa -3'
miRNA:   3'- uCG-UGCACGCcGauGCC--GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 31713 0.75 0.262717
Target:  5'- cAGCAUGUGCGcguGCUgggacgccGCGGCCaCCGCCUc -3'
miRNA:   3'- -UCGUGCACGC---CGA--------UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 32201 0.66 0.677012
Target:  5'- gGGCAUG-GUGGggAUGGCucgcaaCGCgGCCCa -3'
miRNA:   3'- -UCGUGCaCGCCgaUGCCG------GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 32211 0.74 0.280507
Target:  5'- cGCG-GUGacuGGCUAUGGCCGCCGCa- -3'
miRNA:   3'- uCGUgCACg--CCGAUGCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 33197 0.66 0.677012
Target:  5'- aGGUgaAgGUGCaGGC--CGGCgaGCCGCCCa -3'
miRNA:   3'- -UCG--UgCACG-CCGauGCCGg-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 34450 0.66 0.677012
Target:  5'- aGGCGC-UGCgGGCcugGgGGUCGUCGCCg -3'
miRNA:   3'- -UCGUGcACG-CCGa--UgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 34512 0.66 0.695699
Target:  5'- cGCAgGUaGCGGCcGCgGGCCGagaCGCgCg -3'
miRNA:   3'- uCGUgCA-CGCCGaUG-CCGGCg--GCGgG- -5'
14136 3' -63.3 NC_003521.1 + 34631 0.76 0.219758
Target:  5'- aAGCugGUGauCGuGCUcGCGGCCcugGCCGCCCu -3'
miRNA:   3'- -UCGugCAC--GC-CGA-UGCCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 35470 0.72 0.361167
Target:  5'- cAGguCGUGCacGGCgcaGCuGCCGCCGCCg -3'
miRNA:   3'- -UCguGCACG--CCGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 35745 0.71 0.431473
Target:  5'- cAGcCACaUGCGGUUGCGGCUGgaCGCuCCa -3'
miRNA:   3'- -UC-GUGcACGCCGAUGCCGGCg-GCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 36700 0.69 0.545553
Target:  5'- cAGCugGUGaUGGUgcccuuCGuGCCGCaCGCCUa -3'
miRNA:   3'- -UCGugCAC-GCCGau----GC-CGGCG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.