miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 194429 0.67 0.9665
Target:  5'- aGGGACGCaucUGCGacGCcaUCcUCGAGAGCAu -3'
miRNA:   3'- cCUCUGCG---ACGC--CG--AGaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 76348 0.67 0.9665
Target:  5'- cGGuGACgGCUGCGGCggCggCAGcGGCGa -3'
miRNA:   3'- -CCuCUG-CGACGCCGa-GaaGUUcUCGU- -5'
14136 5' -54.5 NC_003521.1 + 46147 0.67 0.966187
Target:  5'- uGGAGACGCUGaccauccUGGCcaUCUgcgUggGAGUg -3'
miRNA:   3'- -CCUCUGCGAC-------GCCG--AGAa--GuuCUCGu -5'
14136 5' -54.5 NC_003521.1 + 202174 0.67 0.965235
Target:  5'- aGGAGGCcacuucuucggaUGCGaGCUCcgUCAAGAGCc -3'
miRNA:   3'- -CCUCUGcg----------ACGC-CGAGa-AGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 76535 0.67 0.963275
Target:  5'- uGGcuGCuGCUGCGGUggCUgucCAGGAGCGg -3'
miRNA:   3'- -CCucUG-CGACGCCGa-GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 209465 0.67 0.959839
Target:  5'- cGGcGACGUgcaGCGGCUCaUCAGGcuguuuaaaGGCGa -3'
miRNA:   3'- -CCuCUGCGa--CGCCGAGaAGUUC---------UCGU- -5'
14136 5' -54.5 NC_003521.1 + 187274 0.67 0.952319
Target:  5'- aGAGACGCgacaGCGGCaCcUCGacccGGAGCGg -3'
miRNA:   3'- cCUCUGCGa---CGCCGaGaAGU----UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 54288 0.67 0.952318
Target:  5'- aGAGGcCGUUGCGGCUggcCAcguAGAGCAg -3'
miRNA:   3'- cCUCU-GCGACGCCGAgaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 16518 0.68 0.948225
Target:  5'- --cGGCGCU-CGGCUCggCuGGAGCGc -3'
miRNA:   3'- ccuCUGCGAcGCCGAGaaGuUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 62398 0.68 0.948225
Target:  5'- cGGAGACGCaggaccucgGCGGCUaccagugUCu-GGGCAu -3'
miRNA:   3'- -CCUCUGCGa--------CGCCGAga-----AGuuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 164491 0.68 0.948225
Target:  5'- -aAGACGgcCUGCGaGUUCgUCAAGGGCGu -3'
miRNA:   3'- ccUCUGC--GACGC-CGAGaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 113571 0.68 0.943906
Target:  5'- aGGAgGACGCgGUGGggCUgggccUCGGGGGCAa -3'
miRNA:   3'- -CCU-CUGCGaCGCCgaGA-----AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 52759 0.68 0.939358
Target:  5'- gGGAGACGa-GCGGCUCUaCcgcGGCAu -3'
miRNA:   3'- -CCUCUGCgaCGCCGAGAaGuucUCGU- -5'
14136 5' -54.5 NC_003521.1 + 84540 0.68 0.939358
Target:  5'- cGAGACGCUGgGGggCUU--GGAGUAc -3'
miRNA:   3'- cCUCUGCGACgCCgaGAAguUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 111395 0.68 0.928538
Target:  5'- aGGGGACGCgcugcaGCGGCUCccccauuucugCAAGcgGGCGg -3'
miRNA:   3'- -CCUCUGCGa-----CGCCGAGaa---------GUUC--UCGU- -5'
14136 5' -54.5 NC_003521.1 + 28904 0.68 0.924325
Target:  5'- cGAGACGCUGCGcgacuacaacguGCUCUUCucuauGGCc -3'
miRNA:   3'- cCUCUGCGACGC------------CGAGAAGuuc--UCGu -5'
14136 5' -54.5 NC_003521.1 + 36722 0.69 0.91885
Target:  5'- uGGAGGCGCaGUGGCgccacCAGGuGCAc -3'
miRNA:   3'- -CCUCUGCGaCGCCGagaa-GUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 160333 0.69 0.91885
Target:  5'- uGGGcGGCGCgGUGGcCUCcgucgUCGAGGGCGu -3'
miRNA:   3'- -CCU-CUGCGaCGCC-GAGa----AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 170848 0.69 0.91885
Target:  5'- cGAGACGCgcguCGGCuUCUccgCGGGGGCGg -3'
miRNA:   3'- cCUCUGCGac--GCCG-AGAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 150645 0.69 0.913142
Target:  5'- cGGGGGCGUgcgcgacgaagGCGGCUCUcCGGcGGCGg -3'
miRNA:   3'- -CCUCUGCGa----------CGCCGAGAaGUUcUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.