miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 73679 0.66 0.977408
Target:  5'- cGAGGCGCccaaGGCgCUgcUCAAGAGCu -3'
miRNA:   3'- cCUCUGCGacg-CCGaGA--AGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 76348 0.67 0.9665
Target:  5'- cGGuGACgGCUGCGGCggCggCAGcGGCGa -3'
miRNA:   3'- -CCuCUG-CGACGCCGa-GaaGUUcUCGU- -5'
14136 5' -54.5 NC_003521.1 + 76465 0.73 0.707888
Target:  5'- uGGAGGuCGCUGUGGCgg--UAGGAGCu -3'
miRNA:   3'- -CCUCU-GCGACGCCGagaaGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 76535 0.67 0.963275
Target:  5'- uGGcuGCuGCUGCGGUggCUgucCAGGAGCGg -3'
miRNA:   3'- -CCucUG-CGACGCCGa-GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 84540 0.68 0.939358
Target:  5'- cGAGACGCUGgGGggCUU--GGAGUAc -3'
miRNA:   3'- cCUCUGCGACgCCgaGAAguUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 87332 0.71 0.819214
Target:  5'- uGGAGGCGCaGCuGCgCggCAAGGGCAu -3'
miRNA:   3'- -CCUCUGCGaCGcCGaGaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 96659 0.66 0.974967
Target:  5'- aGGcGGCGC--CGGCgugCUUgAAGAGCAa -3'
miRNA:   3'- -CCuCUGCGacGCCGa--GAAgUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 100429 0.69 0.901037
Target:  5'- uGAGAagaaGCgGCGGCgc-UCGGGAGCAg -3'
miRNA:   3'- cCUCUg---CGaCGCCGagaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 100701 0.66 0.981756
Target:  5'- cGGAGGCGCcgccGCGGCcgCUgauGGAGgAg -3'
miRNA:   3'- -CCUCUGCGa---CGCCGa-GAaguUCUCgU- -5'
14136 5' -54.5 NC_003521.1 + 110013 0.66 0.974967
Target:  5'- gGGAGAUGUgcaccCGGCUC-UCGuGGGCGc -3'
miRNA:   3'- -CCUCUGCGac---GCCGAGaAGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 111395 0.68 0.928538
Target:  5'- aGGGGACGCgcugcaGCGGCUCccccauuucugCAAGcgGGCGg -3'
miRNA:   3'- -CCUCUGCGa-----CGCCGAGaa---------GUUC--UCGU- -5'
14136 5' -54.5 NC_003521.1 + 112066 0.71 0.835841
Target:  5'- uGGAgGACGCcGCGGUggggaUCAGGGGCGg -3'
miRNA:   3'- -CCU-CUGCGaCGCCGaga--AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 113071 1.11 0.00468
Target:  5'- aGGAGACGCUGCGGCUCUUCAAGAGCAc -3'
miRNA:   3'- -CCUCUGCGACGCCGAGAAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 113571 0.68 0.943906
Target:  5'- aGGAgGACGCgGUGGggCUgggccUCGGGGGCAa -3'
miRNA:   3'- -CCU-CUGCGaCGCCgaGA-----AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 125707 0.71 0.819214
Target:  5'- uGGAGACGCcgGCGGUcaCgaCGGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa-CGCCGa-GaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 127556 0.66 0.97945
Target:  5'- -aAGACGCUGUccgaguuGGCaaUCUUCcacagcAAGAGCAg -3'
miRNA:   3'- ccUCUGCGACG-------CCG--AGAAG------UUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 129287 0.72 0.801926
Target:  5'- aGAGGCGCcgGCGGUaCUUUuuGAGCGg -3'
miRNA:   3'- cCUCUGCGa-CGCCGaGAAGuuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 139915 0.7 0.866881
Target:  5'- aGGAGGCGC-GCuGCUCcUCGGG-GCAc -3'
miRNA:   3'- -CCUCUGCGaCGcCGAGaAGUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 150645 0.69 0.913142
Target:  5'- cGGGGGCGUgcgcgacgaagGCGGCUCUcCGGcGGCGg -3'
miRNA:   3'- -CCUCUGCGa----------CGCCGAGAaGUUcUCGU- -5'
14136 5' -54.5 NC_003521.1 + 152403 0.7 0.874142
Target:  5'- uGGAGACGCgcaGCGcCUUcgugCAAGAGCGc -3'
miRNA:   3'- -CCUCUGCGa--CGCcGAGaa--GUUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.