miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 1390 0.66 0.979668
Target:  5'- cGAGcccGCGCUGCuGCggacgCUgacCAAGAGCGa -3'
miRNA:   3'- cCUC---UGCGACGcCGa----GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 6498 0.66 0.977408
Target:  5'- cGGAGGCGgUGacggcagaGGCUCaccggugaCGAGGGCGg -3'
miRNA:   3'- -CCUCUGCgACg-------CCGAGaa------GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 7708 0.66 0.974967
Target:  5'- -aAGACaCUGgGGCUCUUUuugggugggGAGGGCGg -3'
miRNA:   3'- ccUCUGcGACgCCGAGAAG---------UUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 15869 0.66 0.974967
Target:  5'- aGGAGACGgaGCugguGCUCUguauGGGCGg -3'
miRNA:   3'- -CCUCUGCgaCGc---CGAGAaguuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 16518 0.68 0.948225
Target:  5'- --cGGCGCU-CGGCUCggCuGGAGCGc -3'
miRNA:   3'- ccuCUGCGAcGCCGAGaaGuUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 18676 0.7 0.866881
Target:  5'- cGGGGGCGCUGCaGGaccaUCaUC-AGAGCu -3'
miRNA:   3'- -CCUCUGCGACG-CCg---AGaAGuUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 18728 0.72 0.78404
Target:  5'- cGAGACGCUGcCGGCgCUgc-AGGGCGg -3'
miRNA:   3'- cCUCUGCGAC-GCCGaGAaguUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 28904 0.68 0.924325
Target:  5'- cGAGACGCUGCGcgacuacaacguGCUCUUCucuauGGCc -3'
miRNA:   3'- cCUCUGCGACGC------------CGAGAAGuuc--UCGu -5'
14136 5' -54.5 NC_003521.1 + 35210 0.66 0.96952
Target:  5'- aGGGGGCGC-GCGGgUCggaucGAGCGu -3'
miRNA:   3'- -CCUCUGCGaCGCCgAGaaguuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 36722 0.69 0.91885
Target:  5'- uGGAGGCGCaGUGGCgccacCAGGuGCAc -3'
miRNA:   3'- -CCUCUGCGaCGCCGagaa-GUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 37450 0.7 0.881193
Target:  5'- aGGuGACGCUGUgGGCUCgcgCGcGGGCc -3'
miRNA:   3'- -CCuCUGCGACG-CCGAGaa-GUuCUCGu -5'
14136 5' -54.5 NC_003521.1 + 38221 0.73 0.737156
Target:  5'- aGGAGGCGCaggGCGGCcUCggCGggcGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa--CGCCG-AGaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 46147 0.67 0.966187
Target:  5'- uGGAGACGCUGaccauccUGGCcaUCUgcgUggGAGUg -3'
miRNA:   3'- -CCUCUGCGAC-------GCCG--AGAa--GuuCUCGu -5'
14136 5' -54.5 NC_003521.1 + 52759 0.68 0.939358
Target:  5'- gGGAGACGa-GCGGCUCUaCcgcGGCAu -3'
miRNA:   3'- -CCUCUGCgaCGCCGAGAaGuucUCGU- -5'
14136 5' -54.5 NC_003521.1 + 54288 0.67 0.952318
Target:  5'- aGAGGcCGUUGCGGCUggcCAcguAGAGCAg -3'
miRNA:   3'- cCUCU-GCGACGCCGAgaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 59656 0.66 0.974967
Target:  5'- cGGcAGACGCUgGCGcGC-CUggAGGAGCu -3'
miRNA:   3'- -CC-UCUGCGA-CGC-CGaGAagUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 60818 0.66 0.96952
Target:  5'- cGAGcCGCUGCuGGC-CUUCAGuAGCc -3'
miRNA:   3'- cCUCuGCGACG-CCGaGAAGUUcUCGu -5'
14136 5' -54.5 NC_003521.1 + 61806 0.66 0.979668
Target:  5'- cGGAaaaGACGUUGCGuGauuUCUUCGAGGGg- -3'
miRNA:   3'- -CCU---CUGCGACGC-Cg--AGAAGUUCUCgu -5'
14136 5' -54.5 NC_003521.1 + 62398 0.68 0.948225
Target:  5'- cGGAGACGCaggaccucgGCGGCUaccagugUCu-GGGCAu -3'
miRNA:   3'- -CCUCUGCGa--------CGCCGAga-----AGuuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 66959 0.66 0.979668
Target:  5'- --uGGCGCUGCGGCaggaCGAGcGCAg -3'
miRNA:   3'- ccuCUGCGACGCCGagaaGUUCuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.