miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 113071 1.11 0.00468
Target:  5'- aGGAGACGCUGCGGCUCUUCAAGAGCAc -3'
miRNA:   3'- -CCUCUGCGACGCCGAGAAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 185103 0.74 0.657974
Target:  5'- gGGAGGCGCUGCGcGC-CgaCAugcuGGAGCAc -3'
miRNA:   3'- -CCUCUGCGACGC-CGaGaaGU----UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 76465 0.73 0.707888
Target:  5'- uGGAGGuCGCUGUGGCgg--UAGGAGCu -3'
miRNA:   3'- -CCUCU-GCGACGCCGagaaGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 38221 0.73 0.737156
Target:  5'- aGGAGGCGCaggGCGGCcUCggCGggcGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa--CGCCG-AGaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 238449 0.73 0.737156
Target:  5'- aGGAGGCGCaggGCGGCcUCggCGggcGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa--CGCCG-AGaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 18728 0.72 0.78404
Target:  5'- cGAGACGCUGcCGGCgCUgc-AGGGCGg -3'
miRNA:   3'- cCUCUGCGAC-GCCGaGAaguUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 129287 0.72 0.801926
Target:  5'- aGAGGCGCcgGCGGUaCUUUuuGAGCGg -3'
miRNA:   3'- cCUCUGCGa-CGCCGaGAAGuuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 125707 0.71 0.819214
Target:  5'- uGGAGACGCcgGCGGUcaCgaCGGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa-CGCCGa-GaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 87332 0.71 0.819214
Target:  5'- uGGAGGCGCaGCuGCgCggCAAGGGCAu -3'
miRNA:   3'- -CCUCUGCGaCGcCGaGaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 112066 0.71 0.835841
Target:  5'- uGGAgGACGCcGCGGUggggaUCAGGGGCGg -3'
miRNA:   3'- -CCU-CUGCGaCGCCGaga--AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 220972 0.71 0.851748
Target:  5'- gGGAG-CGCUGCaGCUCcacgUCGcGGGCGa -3'
miRNA:   3'- -CCUCuGCGACGcCGAGa---AGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 139915 0.7 0.866881
Target:  5'- aGGAGGCGC-GCuGCUCcUCGGG-GCAc -3'
miRNA:   3'- -CCUCUGCGaCGcCGAGaAGUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 18676 0.7 0.866881
Target:  5'- cGGGGGCGCUGCaGGaccaUCaUC-AGAGCu -3'
miRNA:   3'- -CCUCUGCGACG-CCg---AGaAGuUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 186777 0.7 0.874142
Target:  5'- cGGAGGCgGCggugGUGGCggCggCGGGGGCAa -3'
miRNA:   3'- -CCUCUG-CGa---CGCCGa-GaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 152403 0.7 0.874142
Target:  5'- uGGAGACGCgcaGCGcCUUcgugCAAGAGCGc -3'
miRNA:   3'- -CCUCUGCGa--CGCcGAGaa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 37450 0.7 0.881193
Target:  5'- aGGuGACGCUGUgGGCUCgcgCGcGGGCc -3'
miRNA:   3'- -CCuCUGCGACG-CCGAGaa-GUuCUCGu -5'
14136 5' -54.5 NC_003521.1 + 218710 0.69 0.901037
Target:  5'- aGGAGACgGCgGCGGCggCgggCGAGaAGCGg -3'
miRNA:   3'- -CCUCUG-CGaCGCCGa-Gaa-GUUC-UCGU- -5'
14136 5' -54.5 NC_003521.1 + 100429 0.69 0.901037
Target:  5'- uGAGAagaaGCgGCGGCgc-UCGGGAGCAg -3'
miRNA:   3'- cCUCUg---CGaCGCCGagaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 174216 0.69 0.907204
Target:  5'- uGGGGuCGC-GCGGgUCgggCAGGGGCGc -3'
miRNA:   3'- -CCUCuGCGaCGCCgAGaa-GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 155759 0.69 0.907204
Target:  5'- cGAGACGCUGCucacGCUgcgcaucacCUacaUCAAGGGCAg -3'
miRNA:   3'- cCUCUGCGACGc---CGA---------GA---AGUUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.